Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002256A_C01 KMC002256A_c01
(417 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07784 AP2 domain protein homolog - potato gi|1688233|gb|AA... 74 6e-13
gb|AAO34704.1| ethylene response factor 2 [Lycopersicon esculentum] 72 2e-12
gb|AAL67489.1|AF459404_1 AP-2 domain containing protein [Narciss... 67 7e-11
dbj|BAB92777.1| B1011A07.25 [Oryza sativa (japonica cultivar-gro... 62 1e-09
emb|CAA05084.1| putative Ckc2 [Arabidopsis thaliana] 61 3e-09
>pir||T07784 AP2 domain protein homolog - potato gi|1688233|gb|AAC29516.1| DNA
binding protein homolog [Solanum tuberosum]
Length = 298
Score = 73.6 bits (179), Expect = 6e-13
Identities = 43/84 (51%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +3
Query: 168 MCGGAIIADFIPRRGGRRLTASELWPNSFGKQNDSQIEKPPMAHQQQQQQPSTFKRSQ-P 344
MCGGAI+ D IPR RRL++++LWP+S S KP Q P KR+Q
Sbjct: 1 MCGGAILYDIIPR--DRRLSSTDLWPSSADFWQTSSFSKPIST----QNVPPKPKRAQLS 54
Query: 345 HIAEKPMKRQRKNLYRGIRQRPWG 416
+E+ KRQRKNLYRGIRQRPWG
Sbjct: 55 RGSEQMKKRQRKNLYRGIRQRPWG 78
>gb|AAO34704.1| ethylene response factor 2 [Lycopersicon esculentum]
Length = 260
Score = 72.0 bits (175), Expect = 2e-12
Identities = 42/84 (50%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +3
Query: 168 MCGGAIIADFIPRRGGRRLTASELWPNSFGKQNDSQIEKPPMAHQQQQQQPSTFKRSQPH 347
MCGGAI+AD IP R RRL++++LWP F P++ Q P KR++P
Sbjct: 1 MCGGAILADIIPPRD-RRLSSTDLWPTDFW----------PISTQNVPLNP---KRARPS 46
Query: 348 IAEKPMK-RQRKNLYRGIRQRPWG 416
+ MK RQRKNLYRGIRQRPWG
Sbjct: 47 TGGEQMKKRQRKNLYRGIRQRPWG 70
>gb|AAL67489.1|AF459404_1 AP-2 domain containing protein [Narcissus pseudonarcissus]
Length = 153
Score = 66.6 bits (161), Expect = 7e-11
Identities = 42/114 (36%), Positives = 57/114 (49%), Gaps = 31/114 (27%)
Frame = +3
Query: 168 MCGGAIIADFIPRRGGRRLTASELWPN---------SFGKQNDSQIEKPPMAHQQQQ--- 311
MCGGAII+DFIP R+LTA LWPN SFG ++D + + + ++
Sbjct: 1 MCGGAIISDFIPPSRSRKLTADYLWPNLNKGKDKKKSFGFEDDFEADFNEFEDESEEGES 60
Query: 312 -----------------QQPSTFKR--SQPHIAEKPMKRQRKNLYRGIRQRPWG 416
++ ST+ + AE+ KR+RKN YRGIRQRPWG
Sbjct: 61 EAVDVKPFKFGAKAGFSREGSTYLKPIELNGAAERSSKRKRKNQYRGIRQRPWG 114
>dbj|BAB92777.1| B1011A07.25 [Oryza sativa (japonica cultivar-group)]
Length = 207
Score = 62.4 bits (150), Expect = 1e-09
Identities = 38/84 (45%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +3
Query: 168 MCGGAIIADFIPRRGGRRLTASELWPNSFGKQNDSQI-EKPPMAHQQQQQQPSTFKRSQP 344
MCGGAII D+IP R RRL AS+ WP++ + EKPP A
Sbjct: 1 MCGGAIIYDYIPAR--RRLCASDFWPDADDSDPHTPAPEKPPRA---------------- 42
Query: 345 HIAEKPMKRQRKNLYRGIRQRPWG 416
KR+RKN YRGIRQRPWG
Sbjct: 43 -------KRERKNQYRGIRQRPWG 59
>emb|CAA05084.1| putative Ckc2 [Arabidopsis thaliana]
Length = 246
Score = 61.2 bits (147), Expect = 3e-09
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Frame = +3
Query: 168 MCGGAIIADFIP---RRGGRRLTASELWPNSFGKQNDS-----QIEKPPMAHQQQQQQPS 323
MCGGAII+D+ P + GR+LTA ELW D K +Q ++
Sbjct: 1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVKEEE 60
Query: 324 TFKRSQPHIAEKPMKRQRKNLYRGIRQRPWG 416
K+ Q E +R+RKN+YRGIR+RPWG
Sbjct: 61 AVKKEQA--TEPGKRRKRKNVYRGIRKRPWG 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,372,465
Number of Sequences: 1393205
Number of extensions: 9944687
Number of successful extensions: 79228
Number of sequences better than 10.0: 465
Number of HSP's better than 10.0 without gapping: 46799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71965
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
