Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002255A_C02 KMC002255A_c02
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C86253 hypothetical protein [imported] - Arabidopsis thalia... 109 3e-23
ref|NP_172653.1| putative vesicle transport protein; protein id:... 109 3e-23
gb|AAO37967.1| putative vesicle trafficking protein [Oryza sativ... 100 1e-20
dbj|BAA96600.1| unnamed protein product [Oryza sativa (japonica ... 82 9e-15
ref|NP_013370.1| Synaptobrevin (v-SNARE) homolog present on ER t... 43 0.003
>pir||C86253 hypothetical protein [imported] - Arabidopsis thaliana
gi|3157951|gb|AAC17634.1| Contains similarity to vesicle
trafficking protein gb|U91538 from Mus musculus. ESTs
gb|F15494 and gb|F14097 come from this gene.
[Arabidopsis thaliana]
Length = 263
Score = 109 bits (273), Expect = 3e-23
Identities = 51/60 (85%), Positives = 58/60 (96%)
Frame = -3
Query: 666 GVGEQLDQVSQMSSHLSSESRIYADKARDLNRQALIRKWAPVAIVLGVVFVLFWLKNKIW 487
GVGE+LDQVS+MSS L+SESRIYADKA+DLNRQALIRKWAPVAIV GVVF+LFW+KNK+W
Sbjct: 204 GVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFWVKNKLW 263
>ref|NP_172653.1| putative vesicle transport protein; protein id: At1g11890.1,
supported by cDNA: 273., supported by cDNA: gi_15027876,
supported by cDNA: gi_19310826 [Arabidopsis thaliana]
gi|27805717|sp|Q94AU2|SC22_ARATH 25.3 kDa vesicle
transport protein (AtSEC22) gi|15027877|gb|AAK76469.1|
putative vesicle transport protein [Arabidopsis
thaliana] gi|19310827|gb|AAL85144.1| putative vesicle
transport protein [Arabidopsis thaliana]
gi|21555190|gb|AAM63800.1| putative vesicle transport
protein [Arabidopsis thaliana]
Length = 218
Score = 109 bits (273), Expect = 3e-23
Identities = 51/60 (85%), Positives = 58/60 (96%)
Frame = -3
Query: 666 GVGEQLDQVSQMSSHLSSESRIYADKARDLNRQALIRKWAPVAIVLGVVFVLFWLKNKIW 487
GVGE+LDQVS+MSS L+SESRIYADKA+DLNRQALIRKWAPVAIV GVVF+LFW+KNK+W
Sbjct: 159 GVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFWVKNKLW 218
>gb|AAO37967.1| putative vesicle trafficking protein [Oryza sativa (japonica
cultivar-group)]
Length = 218
Score = 100 bits (250), Expect = 1e-20
Identities = 46/60 (76%), Positives = 58/60 (96%)
Frame = -3
Query: 666 GVGEQLDQVSQMSSHLSSESRIYADKARDLNRQALIRKWAPVAIVLGVVFVLFWLKNKIW 487
GVGE+LDQV++MS+ L+S++R+YADKA+DLNRQALIRK+APVAIV+GVV +LFWLKNKIW
Sbjct: 159 GVGEKLDQVTEMSTRLTSDTRMYADKAKDLNRQALIRKYAPVAIVIGVVLMLFWLKNKIW 218
>dbj|BAA96600.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 213
Score = 81.6 bits (200), Expect = 9e-15
Identities = 37/53 (69%), Positives = 49/53 (91%)
Frame = -3
Query: 645 QVSQMSSHLSSESRIYADKARDLNRQALIRKWAPVAIVLGVVFVLFWLKNKIW 487
+VS+MS+ L S++RIYA+KA+DLNRQALIRK+A VAIV+G+V +LFW+KNKIW
Sbjct: 161 EVSEMSNRLISDTRIYAEKAKDLNRQALIRKYALVAIVIGIVLMLFWVKNKIW 213
>ref|NP_013370.1| Synaptobrevin (v-SNARE) homolog present on ER to Golgi vesicles;
Sec22p [Saccharomyces cerevisiae]
gi|134542|sp|P22214|SC22_YEAST Protein transport protein
SEC22 (Protein SLY2) gi|1078357|pir||S51405
synaptobrevin SEC22 - yeast (Saccharomyces cerevisiae)
gi|4486|emb|CAA38142.1| Sly2p [Saccharomyces cerevisiae]
gi|577174|gb|AAB67373.1| Sec22p: synaptobrevin (v-SNARE)
homolog [Saccharomyces cerevisiae]
Length = 214
Score = 43.1 bits (100), Expect = 0.003
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = -3
Query: 660 GEQLDQVSQMSSHLSSESRIYADKARDLNRQALIRKWAPVAIVLGVVFVLFW 505
G+ LD++S MSS L S+ Y A+ +N LI ++AP+ IV LFW
Sbjct: 158 GDSLDKMSDMSSSLKETSKRYRKSAQKINFDLLISQYAPIVIVAFFFVFLFW 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,308,268
Number of Sequences: 1393205
Number of extensions: 11950433
Number of successful extensions: 24397
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24361
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
