Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002250A_C01 KMC002250A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11409.1| ubiquitin carboxyl-terminal hydrolase [Arabidops... 64 1e-09
gb|AAG42754.1|AF302663_1 ubiquitin-specific protease 12 [Arabido... 64 1e-09
ref|NP_568171.1| ubiquitin-specific protease 12 (UBP12); protein... 64 1e-09
gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UB... 64 1e-09
dbj|BAC20775.1| putative ubiquitin carboxyl-terminal hydrolase [... 64 1e-09
>dbj|BAB11409.1| ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]
Length = 1126
Score = 63.9 bits (154), Expect = 1e-09
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = -2
Query: 497 LSVYLELTDCEKFPKNRKLFGKFKLGLLDQLHDKY-YEKTASHWFDAPSSQVWWGYKKFV 321
LS+YL+++D P + +F L +++Q+H +Y K H F+A S WG+ F+
Sbjct: 107 LSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESD--WGFTSFM 164
Query: 320 PLSDLHKAAKGYLKDDAIVVNVEI 249
PLS+L+ ++GYL +D ++V E+
Sbjct: 165 PLSELYDPSRGYLVNDTVLVEAEV 188
>gb|AAG42754.1|AF302663_1 ubiquitin-specific protease 12 [Arabidopsis thaliana]
Length = 1116
Score = 63.9 bits (154), Expect = 1e-09
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = -2
Query: 497 LSVYLELTDCEKFPKNRKLFGKFKLGLLDQLHDKY-YEKTASHWFDAPSSQVWWGYKKFV 321
LS+YL+++D P + +F L +++Q+H +Y K H F+A S WG+ F+
Sbjct: 98 LSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESD--WGFTSFM 155
Query: 320 PLSDLHKAAKGYLKDDAIVVNVEI 249
PLS+L+ ++GYL +D ++V E+
Sbjct: 156 PLSELYDPSRGYLVNDTVLVEAEV 179
>ref|NP_568171.1| ubiquitin-specific protease 12 (UBP12); protein id: At5g06600.1,
supported by cDNA: gi_11993470 [Arabidopsis thaliana]
Length = 1116
Score = 63.9 bits (154), Expect = 1e-09
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = -2
Query: 497 LSVYLELTDCEKFPKNRKLFGKFKLGLLDQLHDKY-YEKTASHWFDAPSSQVWWGYKKFV 321
LS+YL+++D P + +F L +++Q+H +Y K H F+A S WG+ F+
Sbjct: 98 LSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESD--WGFTSFM 155
Query: 320 PLSDLHKAAKGYLKDDAIVVNVEI 249
PLS+L+ ++GYL +D ++V E+
Sbjct: 156 PLSELYDPSRGYLVNDTVLVEAEV 179
>gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana]
gi|23296847|gb|AAN13185.1| putative ubiquitin-specific
protease UBP12 [Arabidopsis thaliana]
Length = 1115
Score = 63.9 bits (154), Expect = 1e-09
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = -2
Query: 497 LSVYLELTDCEKFPKNRKLFGKFKLGLLDQLHDKY-YEKTASHWFDAPSSQVWWGYKKFV 321
LS+YL+++D P + +F L +++Q+H +Y K H F+A S WG+ F+
Sbjct: 97 LSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESD--WGFTSFM 154
Query: 320 PLSDLHKAAKGYLKDDAIVVNVEI 249
PLS+L+ ++GYL +D ++V E+
Sbjct: 155 PLSELYDPSRGYLVNDTVLVEAEV 178
>dbj|BAC20775.1| putative ubiquitin carboxyl-terminal hydrolase [Oryza sativa
(japonica cultivar-group)]
Length = 1148
Score = 63.5 bits (153), Expect = 1e-09
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = -2
Query: 497 LSVYLELTDCEKFPKNRKLFGKFKLGLLDQLHDKY-YEKTASHWFDAPSSQVWWGYKKFV 321
LS+YL++ D P + +F L +++Q+H+K+ K H F A S WG+ F+
Sbjct: 172 LSMYLDVADSAVLPYGWTRYAQFSLSVVNQMHNKFTIRKETQHQFSARESD--WGFTSFM 229
Query: 320 PLSDLHKAAKGYLKDDAIVVNVEILTVSIV 231
PL DL+ ++GYL +D +V E+ +V
Sbjct: 230 PLGDLYNPSRGYLVNDTCIVEAEVAVCKVV 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,950,439
Number of Sequences: 1393205
Number of extensions: 8867114
Number of successful extensions: 37076
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 36420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37047
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
