Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002247A_C01 KMC002247A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179145.1| DNA-directed RNA polymerase II, third largest s... 179 2e-44
gb|AAM65319.1| DNA-directed RNA polymerase II, third largest sub... 179 2e-44
ref|NP_179142.1| DNA-directed RNA polymerase II, third largest s... 171 6e-42
pir||S71177 DNA-directed RNA polymerase (EC 2.7.7.6) II 35.5K ch... 167 1e-40
sp|P16925|CNJC_TETTH Conjugation stage-specific protein gi|10239... 70 2e-11
>ref|NP_179145.1| DNA-directed RNA polymerase II, third largest subunit; protein id:
At2g15430.1, supported by cDNA: 3839., supported by
cDNA: gi_17381017, supported by cDNA: gi_20465882
[Arabidopsis thaliana] gi|11134646|sp|Q39211|RP3A_ARATH
DNA-directed RNA polymerase II 36 kDa polypeptide A (RNA
polymerase II subunit 3) gi|2129726|pir||S71176
DNA-directed RNA polymerase (EC 2.7.7.6) II 35.5K chain
A - Arabidopsis thaliana gi|514318|gb|AAB03741.1| RNA
polymerase II third largest subunit
gi|4544370|gb|AAD22281.1| DNA-directed RNA polymerase
II, third largest subunit [Arabidopsis thaliana]
gi|17381018|gb|AAL36321.1| putative DNA-directed RNA
polymerase II third largest subunit [Arabidopsis
thaliana] gi|20465883|gb|AAM20046.1| putative
DNA-directed RNA polymerase II [Arabidopsis thaliana]
Length = 319
Score = 179 bits (455), Expect = 2e-44
Identities = 90/124 (72%), Positives = 109/124 (87%)
Frame = -1
Query: 651 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPG 472
IN+D+M+TL+ +EK + +ES PT VF +D T++V V + E Y+YD+EVIKKAEAMGKPG
Sbjct: 196 INEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKPG 255
Query: 471 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAH 292
L+EI+ K DSFIF VE+TGAVKASQLVLNAI++LKQKLDAVRLS+DTVEADDQFGELGAH
Sbjct: 256 LIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAH 315
Query: 291 MRGG 280
MRGG
Sbjct: 316 MRGG 319
>gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 179 bits (455), Expect = 2e-44
Identities = 90/124 (72%), Positives = 109/124 (87%)
Frame = -1
Query: 651 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPG 472
IN+D+M+TL+ +EK + +ES PT VF +D T++V V + E Y+YD+EVIKKAEAMGKPG
Sbjct: 196 INEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKPG 255
Query: 471 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAH 292
L+EI+ K DSFIF VE+TGAVKASQLVLNAI++LKQKLDAVRLS+DTVEADDQFGELGAH
Sbjct: 256 LIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAH 315
Query: 291 MRGG 280
MRGG
Sbjct: 316 MRGG 319
>ref|NP_179142.1| DNA-directed RNA polymerase II, third largest subunit; protein id:
At2g15400.1 [Arabidopsis thaliana]
gi|12643753|sp|Q39212|RP3B_ARATH DNA-directed RNA
polymerase II 36 kDa polypeptide B (RNA polymerase II
subunit 3) gi|25288351|pir||E84528 hypothetical protein
At2g15400 [imported] - Arabidopsis thaliana
gi|4544373|gb|AAD22284.1| DNA-directed RNA polymerase
II, third largest subunit [Arabidopsis thaliana]
gi|28973621|gb|AAO64135.1| putative DNA-directed RNA
polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 171 bits (434), Expect = 6e-42
Identities = 87/124 (70%), Positives = 105/124 (84%)
Frame = -1
Query: 651 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPG 472
IN+++M TLT +EK + +ES PT VF ID T +V V + E Y+YD+EVIKKAEAMGKPG
Sbjct: 196 INEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTYDEEVIKKAEAMGKPG 255
Query: 471 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAH 292
L+EI K DSF+F VE+TGA+KASQLVLNAI+ILKQKLDA+RLS++TVEADDQFGELGAH
Sbjct: 256 LIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSDNTVEADDQFGELGAH 315
Query: 291 MRGG 280
MR G
Sbjct: 316 MREG 319
>pir||S71177 DNA-directed RNA polymerase (EC 2.7.7.6) II 35.5K chain B -
Arabidopsis thaliana gi|514320|gb|AAB03740.1| RNA
polymerase II third largest subunit
Length = 319
Score = 167 bits (422), Expect = 1e-40
Identities = 85/124 (68%), Positives = 103/124 (82%)
Frame = -1
Query: 651 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPG 472
IN+++M TLT +EK + +ES PT VF ID T +V V + E Y+YD+EVIKKAEAMGKPG
Sbjct: 196 INEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTYDEEVIKKAEAMGKPG 255
Query: 471 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAH 292
L+EI K DSF+ V +TGA+KASQLVLNAI+ILKQKLDA+RLS++TVEADDQFGELGAH
Sbjct: 256 LIEIHPKHDSFVLSVHSTGALKASQLVLNAIDILKQKLDAIRLSDNTVEADDQFGELGAH 315
Query: 291 MRGG 280
MR G
Sbjct: 316 MREG 319
>sp|P16925|CNJC_TETTH Conjugation stage-specific protein gi|102392|pir||S12807 cnjC
protein, conjugation-specific - Tetrahymena thermophila
gi|2654270|emb|CAA44194.1| RNA polymerase subunit
[Tetrahymena thermophila]
Length = 310
Score = 70.5 bits (171), Expect = 2e-11
Identities = 39/103 (37%), Positives = 60/103 (57%), Gaps = 1/103 (0%)
Frame = -1
Query: 651 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVIKK-AEAMGKP 475
I D ++ L +++KK V +CPT VF I+ +T + V + Y +E + K AE KP
Sbjct: 192 IFDQEIQNLDIEQKKALVNACPTKVFGINPHTNTLEVQDHMKCMYCEECVYKCAEDFQKP 251
Query: 474 GLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVR 346
L++I K+D F F VETTG +K +++ L+QKLD +R
Sbjct: 252 KLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMR 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,019,112
Number of Sequences: 1393205
Number of extensions: 9479107
Number of successful extensions: 31492
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 30632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31415
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
