Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002246A_C02 KMC002246A_c02
(1168 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO51122.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 44 0.004
gb|AAN60308.1| unknown [Arabidopsis thaliana] 43 0.011
gb|AAM65162.1| cysteine proteinase RD19A [Arabidopsis thaliana] 43 0.011
ref|NP_568052.1| cysteine proteinase RD19A; protein id: At4g3909... 43 0.011
ref|NP_563855.1| cysteine protease XBCP3; protein id: At1g09850.... 42 0.019
>gb|AAO51122.1| similar to Arabidopsis thaliana (Mouse-ear cress). SAG12 protein
[Dictyostelium discoideum]
Length = 358
Score = 44.3 bits (103), Expect = 0.004
Identities = 26/85 (30%), Positives = 42/85 (48%), Gaps = 7/85 (8%)
Frame = -3
Query: 644 SPFTRREAFNVWNRFYEKVYSDELEEESRFDIFNENLLTKIPSDVTNFG-------AFAD 486
S + R+ FN W + + K+Y D +E E+RF F EN+ I + + G F+D
Sbjct: 36 SDSSMRDTFNHWAKKHSKIYKDSIEMENRFSNFKENMKKNIELNSMHAGKAKFESNGFSD 95
Query: 485 LTKDEFQPIFNDPRCTNYISLLKNS 411
L+++EF + S L+NS
Sbjct: 96 LSEEEFSNFHLNKAFKGKPSHLRNS 120
>gb|AAN60308.1| unknown [Arabidopsis thaliana]
Length = 193
Score = 42.7 bits (99), Expect = 0.011
Identities = 32/102 (31%), Positives = 46/102 (44%), Gaps = 9/102 (8%)
Frame = -3
Query: 962 LTPREAFEIWCQIYGKVYPSKDEEDRRFDLFKLSLDRA-----IPSSQASNFQCLADLTE 798
LT + F ++ + +GKVY S +E D RF +FK +L RA + S +DLT
Sbjct: 45 LTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTR 104
Query: 797 DEFNEVRRIIRQPDCYSSISWKQLKAGNHSPI----TQPNDF 684
EF + +R +K K N +PI P DF
Sbjct: 105 SEFRKKHLGVRS-------GFKLPKDANKAPILPTENLPEDF 139
>gb|AAM65162.1| cysteine proteinase RD19A [Arabidopsis thaliana]
Length = 368
Score = 42.7 bits (99), Expect = 0.011
Identities = 32/102 (31%), Positives = 46/102 (44%), Gaps = 9/102 (8%)
Frame = -3
Query: 962 LTPREAFEIWCQIYGKVYPSKDEEDRRFDLFKLSLDRA-----IPSSQASNFQCLADLTE 798
LT + F ++ + +GKVY S +E D RF +FK +L RA + S +DLT
Sbjct: 45 LTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTR 104
Query: 797 DEFNEVRRIIRQPDCYSSISWKQLKAGNHSPI----TQPNDF 684
EF + +R +K K N +PI P DF
Sbjct: 105 SEFRKKHLGVRS-------GFKLPKDANKAPILPTENLPEDF 139
>ref|NP_568052.1| cysteine proteinase RD19A; protein id: At4g39090.1, supported by
cDNA: 37132., supported by cDNA: gi_19310551
[Arabidopsis thaliana] gi|1172872|sp|P43296|RD19_ARATH
Cysteine proteinase RD19A precursor
gi|541856|pir||JN0718 cysteine proteinase (EC 3.4.22.-)
RD19A precursor, drought-inducible - Arabidopsis
thaliana gi|435618|dbj|BAA02373.1| thiol protease
[Arabidopsis thaliana] gi|4539328|emb|CAB38829.1|
drought-inducible cysteine proteinase RD19A precursor
[Arabidopsis thaliana] gi|7270892|emb|CAB80572.1|
drought-inducible cysteine proteinase RD19A precursor
[Arabidopsis thaliana] gi|19310552|gb|AAL85009.1|
putative cysteine proteinase RD19A [Arabidopsis
thaliana] gi|22136868|gb|AAM91778.1| putative cysteine
proteinase RD19A [Arabidopsis thaliana]
Length = 368
Score = 42.7 bits (99), Expect = 0.011
Identities = 32/102 (31%), Positives = 46/102 (44%), Gaps = 9/102 (8%)
Frame = -3
Query: 962 LTPREAFEIWCQIYGKVYPSKDEEDRRFDLFKLSLDRA-----IPSSQASNFQCLADLTE 798
LT + F ++ + +GKVY S +E D RF +FK +L RA + S +DLT
Sbjct: 45 LTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTR 104
Query: 797 DEFNEVRRIIRQPDCYSSISWKQLKAGNHSPI----TQPNDF 684
EF + +R +K K N +PI P DF
Sbjct: 105 SEFRKKHLGVRS-------GFKLPKDANKAPILPTENLPEDF 139
>ref|NP_563855.1| cysteine protease XBCP3; protein id: At1g09850.1, supported by
cDNA: gi_14600256 [Arabidopsis thaliana]
Length = 437
Score = 42.0 bits (97), Expect = 0.019
Identities = 25/76 (32%), Positives = 39/76 (50%), Gaps = 6/76 (7%)
Frame = -3
Query: 986 NTSDSAIDLTPREAFEIWCQIYGKVYPSKDEEDRRFDLFKLSLDRAIPSSQASN------ 825
++S S+ D++ E F+ WCQ +GK Y S++E +R +FK + D + +N
Sbjct: 20 SSSSSSDDIS--ELFDDWCQKHGKTYGSEEERQQRIQIFKDNHDFVTQHNLITNATYSLS 77
Query: 824 FQCLADLTEDEFNEVR 777
ADLT EF R
Sbjct: 78 LNAFADLTHHEFKASR 93
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 933,402,913
Number of Sequences: 1393205
Number of extensions: 19980560
Number of successful extensions: 59565
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 54305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59162
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 72203657586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
