Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002245A_C01 KMC002245A_c01
(755 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T49917 hypothetical protein T24H18.200 - Arabidopsis thalia... 264 9e-70
gb|AAN41282.1| unknown protein [Arabidopsis thaliana] 264 9e-70
gb|AAK25868.1|AF360158_1 unknown protein [Arabidopsis thaliana] 264 9e-70
ref|NP_196808.1| putative protein; protein id: At5g13040.1 [Arab... 264 9e-70
ref|ZP_00083048.1| hypothetical protein [Pseudomonas fluorescens... 109 4e-23
>pir||T49917 hypothetical protein T24H18.200 - Arabidopsis thaliana
gi|7630059|emb|CAB88267.1| putative protein [Arabidopsis
thaliana]
Length = 554
Score = 264 bits (675), Expect = 9e-70
Identities = 122/168 (72%), Positives = 147/168 (86%)
Frame = -3
Query: 753 DYQAIMTKKLGLPKYNKQLIGKLLSNMAVDKVDYTNFFRTLSNIKADTSIPDDELLVPLK 574
+YQAIM+KKLGL KYNK++I KLL+NM+VDKVDYTNFFR L+N+KA+ + P++ELL PLK
Sbjct: 387 EYQAIMSKKLGLTKYNKEVISKLLNNMSVDKVDYTNFFRLLANVKANPNTPENELLKPLK 446
Query: 573 SVLLDMGKERKEAWTSWLKTYIHELSTGGISDEERKTSMDLVNPKYILRNYLCQTAIDAA 394
+VLLD+GKERKEAW W+++YI E+ +SDEERK MD VNPKYILRNYLCQ+AIDAA
Sbjct: 447 AVLLDIGKERKEAWIKWMRSYIQEVGGSEVSDEERKARMDSVNPKYILRNYLCQSAIDAA 506
Query: 393 EIGDFGEVRRLLKLMEHPFDEQPGMEKYARLPPAWAYRPGVCMLSCSS 250
E GDF EV L++LM+ P++EQPGMEKYARLPPAWAYRPGVCMLSCSS
Sbjct: 507 EQGDFSEVNNLIRLMKRPYEEQPGMEKYARLPPAWAYRPGVCMLSCSS 554
>gb|AAN41282.1| unknown protein [Arabidopsis thaliana]
Length = 633
Score = 264 bits (675), Expect = 9e-70
Identities = 122/168 (72%), Positives = 147/168 (86%)
Frame = -3
Query: 753 DYQAIMTKKLGLPKYNKQLIGKLLSNMAVDKVDYTNFFRTLSNIKADTSIPDDELLVPLK 574
+YQAIM+KKLGL KYNK++I KLL+NM+VDKVDYTNFFR L+N+KA+ + P++ELL PLK
Sbjct: 466 EYQAIMSKKLGLTKYNKEVISKLLNNMSVDKVDYTNFFRLLANVKANPNTPENELLKPLK 525
Query: 573 SVLLDMGKERKEAWTSWLKTYIHELSTGGISDEERKTSMDLVNPKYILRNYLCQTAIDAA 394
+VLLD+GKERKEAW W+++YI E+ +SDEERK MD VNPKYILRNYLCQ+AIDAA
Sbjct: 526 AVLLDIGKERKEAWIKWMRSYIQEVGGSEVSDEERKARMDSVNPKYILRNYLCQSAIDAA 585
Query: 393 EIGDFGEVRRLLKLMEHPFDEQPGMEKYARLPPAWAYRPGVCMLSCSS 250
E GDF EV L++LM+ P++EQPGMEKYARLPPAWAYRPGVCMLSCSS
Sbjct: 586 EQGDFSEVNNLIRLMKRPYEEQPGMEKYARLPPAWAYRPGVCMLSCSS 633
>gb|AAK25868.1|AF360158_1 unknown protein [Arabidopsis thaliana]
Length = 585
Score = 264 bits (675), Expect = 9e-70
Identities = 122/168 (72%), Positives = 147/168 (86%)
Frame = -3
Query: 753 DYQAIMTKKLGLPKYNKQLIGKLLSNMAVDKVDYTNFFRTLSNIKADTSIPDDELLVPLK 574
+YQAIM+KKLGL KYNK++I KLL+NM+VDKVDYTNFFR L+N+KA+ + P++ELL PLK
Sbjct: 418 EYQAIMSKKLGLTKYNKEVISKLLNNMSVDKVDYTNFFRLLANVKANPNTPENELLKPLK 477
Query: 573 SVLLDMGKERKEAWTSWLKTYIHELSTGGISDEERKTSMDLVNPKYILRNYLCQTAIDAA 394
+VLLD+GKERKEAW W+++YI E+ +SDEERK MD VNPKYILRNYLCQ+AIDAA
Sbjct: 478 AVLLDIGKERKEAWIKWMRSYIQEVGGSEVSDEERKARMDSVNPKYILRNYLCQSAIDAA 537
Query: 393 EIGDFGEVRRLLKLMEHPFDEQPGMEKYARLPPAWAYRPGVCMLSCSS 250
E GDF EV L++LM+ P++EQPGMEKYARLPPAWAYRPGVCMLSCSS
Sbjct: 538 EQGDFSEVNNLIRLMKRPYEEQPGMEKYARLPPAWAYRPGVCMLSCSS 585
>ref|NP_196808.1| putative protein; protein id: At5g13040.1 [Arabidopsis thaliana]
Length = 305
Score = 264 bits (675), Expect = 9e-70
Identities = 122/168 (72%), Positives = 147/168 (86%)
Frame = -3
Query: 753 DYQAIMTKKLGLPKYNKQLIGKLLSNMAVDKVDYTNFFRTLSNIKADTSIPDDELLVPLK 574
+YQAIM+KKLGL KYNK++I KLL+NM+VDKVDYTNFFR L+N+KA+ + P++ELL PLK
Sbjct: 138 EYQAIMSKKLGLTKYNKEVISKLLNNMSVDKVDYTNFFRLLANVKANPNTPENELLKPLK 197
Query: 573 SVLLDMGKERKEAWTSWLKTYIHELSTGGISDEERKTSMDLVNPKYILRNYLCQTAIDAA 394
+VLLD+GKERKEAW W+++YI E+ +SDEERK MD VNPKYILRNYLCQ+AIDAA
Sbjct: 198 AVLLDIGKERKEAWIKWMRSYIQEVGGSEVSDEERKARMDSVNPKYILRNYLCQSAIDAA 257
Query: 393 EIGDFGEVRRLLKLMEHPFDEQPGMEKYARLPPAWAYRPGVCMLSCSS 250
E GDF EV L++LM+ P++EQPGMEKYARLPPAWAYRPGVCMLSCSS
Sbjct: 258 EQGDFSEVNNLIRLMKRPYEEQPGMEKYARLPPAWAYRPGVCMLSCSS 305
>ref|ZP_00083048.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 464
Score = 109 bits (273), Expect = 4e-23
Identities = 67/171 (39%), Positives = 96/171 (55%), Gaps = 4/171 (2%)
Frame = -3
Query: 750 YQAIMTKKLGLPKY---NKQLIGKLLSNMAVDKVDYTNFFRTLSNIKADTSIPDDELLVP 580
Y +M ++LG ++ L+ +LL M VDYT FFR L A+ ++
Sbjct: 308 YLDLMRRRLGFTTAEDDDQMLLEQLLQLMQNSGVDYTLFFRRLGEESAEQAV------AR 361
Query: 579 LKSVLLDMGKERKEAWTSWLKTYIHELSTGGISDEE-RKTSMDLVNPKYILRNYLCQTAI 403
L+ +D+ + + +W + Y+ ++ G +D+E R+ M VNP YILRNYL Q AI
Sbjct: 362 LRDDFVDI-----KGFDAWGERYVARVARDGATDQEQRRARMHAVNPLYILRNYLAQKAI 416
Query: 402 DAAEIGDFGEVRRLLKLMEHPFDEQPGMEKYARLPPAWAYRPGVCMLSCSS 250
DAAE GD+ EVRRL ++ +PF+EQPGME YA PP W +SCSS
Sbjct: 417 DAAEQGDYSEVRRLHAVLSNPFEEQPGMESYAERPPEWGKH---LEISCSS 464
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 653,877,057
Number of Sequences: 1393205
Number of extensions: 14890699
Number of successful extensions: 37941
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 36293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37839
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
