Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002243A_C02 KMC002243A_c02
(801 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65141.1| unknown [Arabidopsis thaliana] 131 1e-29
ref|NP_569020.1| putative protein; protein id: At5g65810.1, supp... 129 4e-29
ref|NP_566924.1| expressed protein; protein id: At3g49720.1, sup... 125 6e-28
gb|AAL24420.1| Unknown protein [Arabidopsis thaliana] gi|2138702... 125 6e-28
dbj|BAB16471.1| P0019D06.30 [Oryza sativa (japonica cultivar-gro... 124 2e-27
>gb|AAM65141.1| unknown [Arabidopsis thaliana]
Length = 258
Score = 131 bits (329), Expect = 1e-29
Identities = 60/87 (68%), Positives = 74/87 (84%)
Frame = -1
Query: 801 KTLPDLVRVSADGLVIFTGFPTNQKAKVADVSKFGRAAKMRSSSWWVKYFLQTNLEENEA 622
KT+P+L RV++DG+V+ G P QKAK A++SKFGR AKMRSSSWW+++F QTNLEENEA
Sbjct: 172 KTVPELARVASDGVVLLAGNPGQQKAKGAELSKFGRPAKMRSSSWWIRFFSQTNLEENEA 231
Query: 621 AYKKFEQASTKSSYVPKCQIFHLKSLH 541
A KKFEQA++KSSY P CQ+FHLK LH
Sbjct: 232 ASKKFEQAASKSSYKPACQVFHLKPLH 258
>ref|NP_569020.1| putative protein; protein id: At5g65810.1, supported by cDNA:
36946. [Arabidopsis thaliana]
Length = 258
Score = 129 bits (325), Expect = 4e-29
Identities = 59/87 (67%), Positives = 73/87 (83%)
Frame = -1
Query: 801 KTLPDLVRVSADGLVIFTGFPTNQKAKVADVSKFGRAAKMRSSSWWVKYFLQTNLEENEA 622
KT+P+L RV++DG+V+ G P QKAK ++SKFGR AKMRSSSWW+++F QTNLEENEA
Sbjct: 172 KTVPELARVASDGVVLLAGNPGQQKAKGGELSKFGRPAKMRSSSWWIRFFSQTNLEENEA 231
Query: 621 AYKKFEQASTKSSYVPKCQIFHLKSLH 541
A KKFEQA++KSSY P CQ+FHLK LH
Sbjct: 232 ASKKFEQAASKSSYKPACQVFHLKPLH 258
>ref|NP_566924.1| expressed protein; protein id: At3g49720.1, supported by cDNA:
35598. [Arabidopsis thaliana] gi|11285664|pir||T46038
hypothetical protein T16K5.70 - Arabidopsis thaliana
gi|6723417|emb|CAB66910.1| hypothetical protein
[Arabidopsis thaliana] gi|21593048|gb|AAM64997.1|
unknown [Arabidopsis thaliana]
Length = 261
Score = 125 bits (315), Expect = 6e-28
Identities = 56/87 (64%), Positives = 72/87 (82%)
Frame = -1
Query: 801 KTLPDLVRVSADGLVIFTGFPTNQKAKVADVSKFGRAAKMRSSSWWVKYFLQTNLEENEA 622
KT+P+L RV++DG+V+F G P Q+AKVA++SKFGR AKMRS+SWW ++F+QTNLEEN+A
Sbjct: 175 KTVPELARVASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSASWWNRFFVQTNLEENDA 234
Query: 621 AYKKFEQASTKSSYVPKCQIFHLKSLH 541
KKFEQA +K Y P CQ+FHLK LH
Sbjct: 235 PSKKFEQAVSKGLYKPACQVFHLKPLH 261
>gb|AAL24420.1| Unknown protein [Arabidopsis thaliana] gi|21387025|gb|AAM47916.1|
unknown protein [Arabidopsis thaliana]
Length = 171
Score = 125 bits (315), Expect = 6e-28
Identities = 56/87 (64%), Positives = 72/87 (82%)
Frame = -1
Query: 801 KTLPDLVRVSADGLVIFTGFPTNQKAKVADVSKFGRAAKMRSSSWWVKYFLQTNLEENEA 622
KT+P+L RV++DG+V+F G P Q+AKVA++SKFGR AKMRS+SWW ++F+QTNLEEN+A
Sbjct: 85 KTVPELARVASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSASWWNRFFVQTNLEENDA 144
Query: 621 AYKKFEQASTKSSYVPKCQIFHLKSLH 541
KKFEQA +K Y P CQ+FHLK LH
Sbjct: 145 PSKKFEQAVSKGLYKPACQVFHLKPLH 171
>dbj|BAB16471.1| P0019D06.30 [Oryza sativa (japonica cultivar-group)]
gi|13486897|dbj|BAB40126.1| P0024G09.18 [Oryza sativa
(japonica cultivar-group)]
Length = 258
Score = 124 bits (310), Expect = 2e-27
Identities = 57/85 (67%), Positives = 67/85 (78%)
Frame = -1
Query: 801 KTLPDLVRVSADGLVIFTGFPTNQKAKVADVSKFGRAAKMRSSSWWVKYFLQTNLEENEA 622
KTLPDL R+S DGLVIF G P QKAKV+++ KFGR AK+RSSSWW +YF+QT L ENE
Sbjct: 174 KTLPDLARISTDGLVIFAGNPGQQKAKVSELPKFGRPAKLRSSSWWSRYFIQTGLRENEG 233
Query: 621 AYKKFEQASTKSSYVPKCQIFHLKS 547
KKFEQA++K+ Y P CQIFHL S
Sbjct: 234 PLKKFEQAASKNKYKPDCQIFHLSS 258
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 661,913,231
Number of Sequences: 1393205
Number of extensions: 13725161
Number of successful extensions: 28573
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28569
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
