Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002241A_C01 KMC002241A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA14607.1| agCP2208 [Anopheles gambiae str. PEST] 31 9.5
ref|NP_006910.1|ND4_10015 NADH dehydrogenase subunit 4 [Drosophi... 31 9.5
>gb|EAA14607.1| agCP2208 [Anopheles gambiae str. PEST]
Length = 803
Score = 30.8 bits (68), Expect = 9.5
Identities = 14/49 (28%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
Frame = +3
Query: 219 SNIRSLIQNPLLSLISQTGWITCRSLNKCSSDSCXSLNKG--HSVEEAK 359
+ +R+ + NPLL + + W TC++ CS C + H EE++
Sbjct: 139 AGLRAHLTNPLLLCLERHNWRTCQNRAVCSIGGCTRRHHALLHGAEESR 187
>ref|NP_006910.1|ND4_10015 NADH dehydrogenase subunit 4 [Drosophila yakuba]
gi|128746|sp|P07707|NU4M_DROYA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 gi|85265|pir||I25797 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - fruit
fly (Drosophila yakuba) mitochondrion
gi|12932|emb|CAA26993.1| NADH dehydrogenase (ubiquinone)
chain 4 [Drosophila yakuba]
Length = 446
Score = 30.8 bits (68), Expect = 9.5
Identities = 20/69 (28%), Positives = 39/69 (55%)
Frame = -1
Query: 256 LNNGFWIRLLMLLWLNFIYIWSSSC*IN*SNVSYWSNFKLDIFLGSHSCYSLGWCLSCYS 77
+NN +W+ +ML +++FI++ ++ ++YWS ++ FLG C L + L S
Sbjct: 17 INNMYWMVQIMLFFISFIFLLMNNF------MNYWS--EISYFLG---CDMLSYGLVLLS 65
Query: 76 LTWLSSCVI 50
L W+ S ++
Sbjct: 66 L-WICSLML 73
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,832,370
Number of Sequences: 1393205
Number of extensions: 7000496
Number of successful extensions: 14555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14541
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
