Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002240A_C01 KMC002240A_c01
(456 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171933.1| putative 1-aminocyclopropane-1-carboxylate oxid... 82 2e-15
dbj|BAB68392.1| CmE8 [Cucumis melo] 80 1e-14
ref|NP_200762.1| 1-aminocyclopropane-1-carboxylate oxidase - lik... 79 2e-14
ref|NP_200761.1| 1-aminocyclopropane-1-carboxylate oxidase - lik... 77 6e-14
gb|AAD38147.1|AF139500_1 unknown [Prunus armeniaca] 74 5e-13
>ref|NP_171933.1| putative 1-aminocyclopropane-1-carboxylate oxidase; protein id:
At1g04380.1 [Arabidopsis thaliana]
gi|25285694|pir||E86175 hypothetical protein [imported]
- Arabidopsis thaliana gi|1903357|gb|AAB70438.1| Strong
similarity to Arabidopsis 2A6 (gb|X83096). [Arabidopsis
thaliana]
Length = 345
Score = 82.4 bits (202), Expect = 2e-15
Identities = 44/73 (60%), Positives = 51/73 (69%)
Frame = -3
Query: 454 HRVLSRHVGPRISIASFFVNISSQGKSKVIGPIKELLSEENPPIYREATIKDVMAHYIEK 275
HRVL+ VGPRISIA FF + S S V GPIKELLSEENPP YR+ TI + YIEK
Sbjct: 274 HRVLTNRVGPRISIACFFSS-SMNPNSTVYGPIKELLSEENPPKYRDFTIPEYSKGYIEK 332
Query: 274 GLDGNSSLEPFKM 236
GLDG S L +++
Sbjct: 333 GLDGTSHLSHYRI 345
>dbj|BAB68392.1| CmE8 [Cucumis melo]
Length = 367
Score = 79.7 bits (195), Expect = 1e-14
Identities = 41/76 (53%), Positives = 55/76 (71%), Gaps = 3/76 (3%)
Frame = -3
Query: 454 HRVLSRHVGPRISIASFFVNISSQGK---SKVIGPIKELLSEENPPIYREATIKDVMAHY 284
H+VL+ GPRIS+ASFF S G+ SK+ GPIKELLSE+NPP Y+E T+++ ++
Sbjct: 296 HKVLANREGPRISVASFF----STGRLPTSKLYGPIKELLSEQNPPKYKEITVREYNIYF 351
Query: 283 IEKGLDGNSSLEPFKM 236
EKGLDG S+L FK+
Sbjct: 352 AEKGLDGTSALPHFKI 367
>ref|NP_200762.1| 1-aminocyclopropane-1-carboxylate oxidase - like protein; protein
id: At5g59540.1, supported by cDNA: gi_15983482
[Arabidopsis thaliana] gi|8885558|dbj|BAA97488.1|
leucoanthocyanidin dioxygenase-like protein [Arabidopsis
thaliana] gi|15983483|gb|AAL11609.1|AF424616_1
AT5g59540/f2o15_200 [Arabidopsis thaliana]
Length = 366
Score = 79.0 bits (193), Expect = 2e-14
Identities = 40/73 (54%), Positives = 52/73 (70%)
Frame = -3
Query: 454 HRVLSRHVGPRISIASFFVNISSQGKSKVIGPIKELLSEENPPIYREATIKDVMAHYIEK 275
HRVL+ GPRIS+ASFF + S + S+V GP+KEL+SEENPP YR+ TIK+ + EK
Sbjct: 295 HRVLANRQGPRISVASFFSS-SMRPNSRVYGPMKELVSEENPPKYRDITIKEYSKIFFEK 353
Query: 274 GLDGNSSLEPFKM 236
GLDG S L ++
Sbjct: 354 GLDGTSHLSNIRI 366
>ref|NP_200761.1| 1-aminocyclopropane-1-carboxylate oxidase - like protein; protein
id: At5g59530.1 [Arabidopsis thaliana]
gi|8885557|dbj|BAA97487.1| leucoanthocyanidin
dioxygenase-like protein [Arabidopsis thaliana]
Length = 364
Score = 77.4 bits (189), Expect = 6e-14
Identities = 39/73 (53%), Positives = 52/73 (70%)
Frame = -3
Query: 454 HRVLSRHVGPRISIASFFVNISSQGKSKVIGPIKELLSEENPPIYREATIKDVMAHYIEK 275
HRVL+ GPRIS+ASFF + S + S V GP+KEL+SEENPP YR+ T+++ Y +K
Sbjct: 293 HRVLANTRGPRISVASFFSS-SIRENSTVYGPMKELVSEENPPKYRDTTLREYSEGYFKK 351
Query: 274 GLDGNSSLEPFKM 236
GLDG S L F++
Sbjct: 352 GLDGTSHLSNFRI 364
>gb|AAD38147.1|AF139500_1 unknown [Prunus armeniaca]
Length = 370
Score = 74.3 bits (181), Expect = 5e-13
Identities = 37/73 (50%), Positives = 48/73 (65%)
Frame = -3
Query: 454 HRVLSRHVGPRISIASFFVNISSQGKSKVIGPIKELLSEENPPIYREATIKDVMAHYIEK 275
HRVL+ PR+S+A FF + ++ GPIKELLSE+N P YRE T+KD AH+ K
Sbjct: 299 HRVLANRACPRVSVACFF-STGFLALPRIYGPIKELLSEDNLPKYRETTVKDYNAHHYNK 357
Query: 274 GLDGNSSLEPFKM 236
GLDG +L FK+
Sbjct: 358 GLDGTCALTHFKL 370
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,861,817
Number of Sequences: 1393205
Number of extensions: 7407087
Number of successful extensions: 15697
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 15326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15673
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
