Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002237A_C01 KMC002237A_c01
(738 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187101.1| unknown protein; protein id: At3g04510.1 [Arabi... 172 6e-42
ref|NP_565716.1| expressed protein; protein id: At2g31160.1, sup... 170 2e-41
ref|NP_198201.1| putative protein; protein id: At5g28490.1 [Arab... 169 4e-41
gb|AAG13584.1|AC037425_15 hypothetical protein [Oryza sativa] 164 9e-40
ref|NP_563780.1| expressed protein; protein id: At1g07090.1, sup... 154 2e-36
>ref|NP_187101.1| unknown protein; protein id: At3g04510.1 [Arabidopsis thaliana]
gi|7547110|gb|AAF63782.1| unknown protein [Arabidopsis
thaliana]
Length = 201
Score = 172 bits (435), Expect = 6e-42
Identities = 79/95 (83%), Positives = 86/95 (90%)
Frame = -3
Query: 736 QFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPETNPFGA 557
QFGKTKVH+ C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PET+PFG+
Sbjct: 75 QFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGS 134
Query: 556 RAVRIYLRDVRDFQTKARGVSYEKKRKRPKPKMIT 452
R+VRI+LR+VRDFQ K+RGVSYEKKRKR K IT
Sbjct: 135 RSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQIT 169
>ref|NP_565716.1| expressed protein; protein id: At2g31160.1, supported by cDNA:
gi_15912210, supported by cDNA: gi_19547988 [Arabidopsis
thaliana] gi|25408134|pir||C84717 hypothetical protein
At2g31160 [imported] - Arabidopsis thaliana
gi|3746060|gb|AAC63835.1| expressed protein [Arabidopsis
thaliana] gi|15912211|gb|AAL08239.1| At2g31160/T16B12.3
[Arabidopsis thaliana] gi|19547989|gb|AAL87358.1|
At2g31160/T16B12.3 [Arabidopsis thaliana]
Length = 219
Score = 170 bits (431), Expect = 2e-41
Identities = 79/104 (75%), Positives = 92/104 (87%), Gaps = 1/104 (0%)
Frame = -3
Query: 736 QFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPETNPFGA 557
QFGKTKVH + C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG+PETNPFGA
Sbjct: 96 QFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGA 155
Query: 556 RAVRIYLRDVRDFQTKARGVSYE-KKRKRPKPKMITTTAATAST 428
RAVR+YLR+VRD Q+KARGVSYE KKRKRP P T++++ ++
Sbjct: 156 RAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAVAS 199
>ref|NP_198201.1| putative protein; protein id: At5g28490.1 [Arabidopsis thaliana]
Length = 190
Score = 169 bits (428), Expect = 4e-41
Identities = 77/88 (87%), Positives = 82/88 (92%)
Frame = -3
Query: 736 QFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPETNPFGA 557
QFGKTKVH+ C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PE NPFG+
Sbjct: 67 QFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGS 126
Query: 556 RAVRIYLRDVRDFQTKARGVSYEKKRKR 473
RAVR++LR+VRDFQ KARGVSYEKKRKR
Sbjct: 127 RAVRLFLREVRDFQAKARGVSYEKKRKR 154
>gb|AAG13584.1|AC037425_15 hypothetical protein [Oryza sativa]
Length = 204
Score = 164 bits (416), Expect = 9e-40
Identities = 75/99 (75%), Positives = 84/99 (84%)
Frame = -3
Query: 736 QFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPETNPFGA 557
QFGKTKVH CPFFG P PPAPCPCPLRQAWGSLDAL+GRLRAAYEENGGRPE NPFGA
Sbjct: 82 QFGKTKVHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGA 141
Query: 556 RAVRIYLRDVRDFQTKARGVSYEKKRKRPKPKMITTTAA 440
RAVR+YLR+VR+ Q +ARGVSYEKK+++ P + AA
Sbjct: 142 RAVRLYLREVREHQARARGVSYEKKKRKKPPHPSSAAAA 180
>ref|NP_563780.1| expressed protein; protein id: At1g07090.1, supported by cDNA:
28780. [Arabidopsis thaliana] gi|25341953|pir||G86205
hypothetical protein [imported] - Arabidopsis thaliana
gi|8954037|gb|AAF82211.1|AC067971_19 Strong similarity
to an unknown protein At2g31160 gi|3746060 from
Arabidopsis thaliana BAC F7F1 gb|AC005311. EST
gb|AI998165 comes from this gene
gi|21555695|gb|AAM63916.1| unknown [Arabidopsis
thaliana] gi|28392914|gb|AAO41893.1| unknown protein
[Arabidopsis thaliana]
Length = 196
Score = 154 bits (388), Expect = 2e-36
Identities = 70/103 (67%), Positives = 83/103 (79%)
Frame = -3
Query: 736 QFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPETNPFGA 557
QFGKTKVH CP+FG PP+PC CPL+QAWGSLDALIGRLRAAYEENGGRP++NPF A
Sbjct: 73 QFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAA 132
Query: 556 RAVRIYLRDVRDFQTKARGVSYEKKRKRPKPKMITTTAATAST 428
RAVRIYLR+VR+ Q KARG+ YEKK+++ P + T AS+
Sbjct: 133 RAVRIYLREVRESQAKARGIPYEKKKRKRPPTVTTVRVDVASS 175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 646,317,714
Number of Sequences: 1393205
Number of extensions: 15080397
Number of successful extensions: 58046
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 47835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56842
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
