Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002236A_C01 KMC002236A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF27287.1|AF136007_1 eukaryotic initiation factor 4B [Arabid... 114 1e-24
ref|NP_172761.1| unknown protein; protein id: At1g13020.1 [Arabi... 114 1e-24
gb|AAF05869.1|AF021805_1 eIF4B [Arabidopsis thaliana] 107 8e-23
ref|NP_189271.1| eukaryotic translation initiation factor 4B, pu... 104 7e-22
gb|AAF27285.1| eukaryotic initiation factor 4B [Arabidopsis thal... 104 7e-22
>gb|AAF27287.1|AF136007_1 eukaryotic initiation factor 4B [Arabidopsis thaliana]
Length = 549
Score = 114 bits (284), Expect = 1e-24
Identities = 56/91 (61%), Positives = 69/91 (75%)
Frame = -3
Query: 569 DDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMRPS 390
DDKVRF +AV+RPGSSA R S+RP SR+GS ++SRSV+ +RPRS GTGD W RP
Sbjct: 460 DDKVRFRPRAVERPGSSASRGGSYSERPHSRAGSIDESRSVESMERPRSHGTGDNWPRPV 519
Query: 389 DDRRQFQGSRERGFFSGSRDMDSRSRSRERW 297
DDRR FQGS+ERGFF+ +R+ D S +RE W
Sbjct: 520 DDRRNFQGSKERGFFN-NRNFDRSSSAREGW 549
>ref|NP_172761.1| unknown protein; protein id: At1g13020.1 [Arabidopsis thaliana]
gi|25518355|pir||B86264 hypothetical protein F3F19.4
[imported] - Arabidopsis thaliana
gi|4850385|gb|AAD31055.1|AC007357_4 EST gb|T22808 comes
from this gene. [Arabidopsis thaliana]
Length = 549
Score = 114 bits (284), Expect = 1e-24
Identities = 56/91 (61%), Positives = 69/91 (75%)
Frame = -3
Query: 569 DDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMRPS 390
DDKVRF +AV+RPGSSA R S+RP SR+GS ++SRSV+ +RPRS GTGD W RP
Sbjct: 460 DDKVRFRPRAVERPGSSASRGGSYSERPHSRAGSIDESRSVESMERPRSHGTGDNWPRPV 519
Query: 389 DDRRQFQGSRERGFFSGSRDMDSRSRSRERW 297
DDRR FQGS+ERGFF+ +R+ D S +RE W
Sbjct: 520 DDRRNFQGSKERGFFN-NRNFDRSSSAREGW 549
>gb|AAF05869.1|AF021805_1 eIF4B [Arabidopsis thaliana]
Length = 531
Score = 107 bits (268), Expect = 8e-23
Identities = 55/92 (59%), Positives = 69/92 (74%), Gaps = 1/92 (1%)
Frame = -3
Query: 569 DDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMRPS 390
DDKVRF QK V+RPGS AGRT S+R SR+GS +++RS + ++RPRSRG DAW+RP+
Sbjct: 446 DDKVRFRQKPVERPGSGAGRTGTYSERTHSRAGSIDETRSFESTERPRSRGAVDAWVRPA 505
Query: 389 DD-RRQFQGSRERGFFSGSRDMDSRSRSRERW 297
D+ RR FQGS+ERGFFS +RS SRE W
Sbjct: 506 DEQRRNFQGSKERGFFS------NRSSSREGW 531
>ref|NP_189271.1| eukaryotic translation initiation factor 4B, putative; protein id:
At3g26400.1 [Arabidopsis thaliana]
gi|9294299|dbj|BAB02201.1| eukaryotic initiation factor
4B [Arabidopsis thaliana]
Length = 532
Score = 104 bits (260), Expect = 7e-22
Identities = 53/92 (57%), Positives = 69/92 (74%), Gaps = 1/92 (1%)
Frame = -3
Query: 569 DDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMRPS 390
DDKVRF QK V+RPGS AGRT S+R SR+GS +++RS + ++RPRSRG DAW+RP+
Sbjct: 447 DDKVRFRQKPVERPGSGAGRTGTYSERTHSRAGSIDETRSFESTERPRSRGAVDAWVRPA 506
Query: 389 DD-RRQFQGSRERGFFSGSRDMDSRSRSRERW 297
++ RR FQG++ERGFFS +RS SRE W
Sbjct: 507 NEQRRNFQGTKERGFFS------NRSSSREGW 532
>gb|AAF27285.1| eukaryotic initiation factor 4B [Arabidopsis thaliana]
Length = 325
Score = 104 bits (260), Expect = 7e-22
Identities = 53/92 (57%), Positives = 69/92 (74%), Gaps = 1/92 (1%)
Frame = -3
Query: 569 DDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMRPS 390
DDKVRF QK V+RPGS AGRT S+R SR+GS +++RS + ++RPRSRG DAW+RP+
Sbjct: 240 DDKVRFRQKPVERPGSGAGRTGTYSERTHSRAGSIDETRSFESTERPRSRGAVDAWVRPA 299
Query: 389 DD-RRQFQGSRERGFFSGSRDMDSRSRSRERW 297
++ RR FQG++ERGFFS +RS SRE W
Sbjct: 300 NEQRRNFQGTKERGFFS------NRSSSREGW 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,143,286
Number of Sequences: 1393205
Number of extensions: 10414251
Number of successful extensions: 28783
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 27401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28617
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
