Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002235A_C01 KMC002235A_c01
(692 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM66025.1| unknown [Arabidopsis thaliana] 96 6e-19
ref|NP_566251.1| mitochondrial carrier protein family; protein i... 96 6e-19
ref|NP_198104.1| mitochondrial carrier protein family; protein i... 94 2e-18
ref|NP_006349.1| solute carrier family 25 (mitochondrial carrier... 48 1e-04
ref|NP_728982.1| CG32250-PA [Drosophila melanogaster] gi|2309300... 45 0.001
>gb|AAM66025.1| unknown [Arabidopsis thaliana]
Length = 322
Score = 95.5 bits (236), Expect = 6e-19
Identities = 45/64 (70%), Positives = 57/64 (88%)
Frame = -3
Query: 684 KSPKTVSGVIAGIWRREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILALKR 505
++ KT+ GV+ IWR+EG+LG+FKGL AQILKTVLSSALLLMIKEKI+ATTW+LILA++R
Sbjct: 249 RTRKTIPGVVYAIWRKEGMLGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAIRR 308
Query: 504 YLLV 493
L +
Sbjct: 309 TLFL 312
>ref|NP_566251.1| mitochondrial carrier protein family; protein id: At3g05290.1,
supported by cDNA: 7124., supported by cDNA: gi_15081796
[Arabidopsis thaliana]
gi|6729039|gb|AAF27035.1|AC009177_25 unknown protein
[Arabidopsis thaliana] gi|15081797|gb|AAK82553.1|
AT3g05290/T12H1_26 [Arabidopsis thaliana]
gi|23507743|gb|AAN38675.1| At3g05290/T12H1_26
[Arabidopsis thaliana]
Length = 322
Score = 95.5 bits (236), Expect = 6e-19
Identities = 45/64 (70%), Positives = 57/64 (88%)
Frame = -3
Query: 684 KSPKTVSGVIAGIWRREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILALKR 505
++ KT+ GV+ IWR+EG+LG+FKGL AQILKTVLSSALLLMIKEKI+ATTW+LILA++R
Sbjct: 249 RTRKTIPGVVYAIWRKEGMLGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAIRR 308
Query: 504 YLLV 493
L +
Sbjct: 309 TLFL 312
>ref|NP_198104.1| mitochondrial carrier protein family; protein id: At5g27520.1,
supported by cDNA: 20865., supported by cDNA:
gi_17380871 [Arabidopsis thaliana]
gi|17380872|gb|AAL36248.1| unknown protein [Arabidopsis
thaliana] gi|21689661|gb|AAM67452.1| unknown protein
[Arabidopsis thaliana]
Length = 321
Score = 94.0 bits (232), Expect = 2e-18
Identities = 48/64 (75%), Positives = 56/64 (87%)
Frame = -3
Query: 675 KTVSGVIAGIWRREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILALKRYLL 496
KT+ GV+ IW++EGILG+FKGL AQILKTVLSSALLLMIKEKI+ATTW+LILA+ R L
Sbjct: 254 KTIPGVVYAIWKKEGILGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAI-RTLF 312
Query: 495 VPKA 484
V KA
Sbjct: 313 VTKA 316
>ref|NP_006349.1| solute carrier family 25 (mitochondrial carrier; peroxisomal
membrane protein, 34kDa), member 17; peroxisomal
membrane protein (34kD); solute carrier family 25
(mitochondrial carrier; peroxisomal membrane protein,
34kD), member 17 [Homo sapiens]
gi|12643354|sp|O43808|PM34_HUMAN Peroxisomal membrane
protein PMP34 (34 kDa peroxisomal membrane protein)
(Solute carrier family 25, member 17)
gi|2808531|emb|CAA73367.1| peroxisomal integral membrane
protein [Homo sapiens]
gi|13543612|gb|AAH05957.1|AAH05957 solute carrier family
25 (mitochondrial carrier; peroxisomal membrane protein,
34kD), member 17 [Homo sapiens]
gi|15278111|gb|AAH12998.1|AAH12998 Similar to solute
carrier family 25 (mitochondrial carrier; peroxisomal
membrane protein, 34kD), member 17 [Homo sapiens]
Length = 307
Score = 47.8 bits (112), Expect = 1e-04
Identities = 22/46 (47%), Positives = 37/46 (79%)
Frame = -3
Query: 642 RREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILALKR 505
RR GI+G +KGL A++L+TVL++AL+ ++ EK++A T+ ++ LKR
Sbjct: 259 RRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTAATFT-VMGLKR 303
>ref|NP_728982.1| CG32250-PA [Drosophila melanogaster] gi|23093002|gb|AAF47885.2|
CG32250-PA [Drosophila melanogaster]
Length = 314
Score = 45.1 bits (105), Expect = 0.001
Identities = 24/56 (42%), Positives = 39/56 (68%), Gaps = 2/56 (3%)
Frame = -3
Query: 681 SPKTVSGV--IAGIWRREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLI 520
+P+T S + + I + +GI G F+GL A+IL+TVL++AL+ M EKI+ T +L+
Sbjct: 256 TPRTESTLELMISILQHQGIRGLFRGLEAKILQTVLTAALMFMAYEKIAGTVGMLL 311
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,939,763
Number of Sequences: 1393205
Number of extensions: 10917856
Number of successful extensions: 22305
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 21657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22302
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
