Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002232A_C01 KMC002232A_c01
(676 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680752.1| WRKY family transcription factor; protein id: A... 178 5e-44
ref|NP_567878.2| WRKY family transcription factor; protein id: A... 175 4e-43
gb|AAL24088.1| putative putaive DNA-binding protein [Arabidopsis... 175 6e-43
ref|NP_565574.1| WRKY family transcription factor; protein id: A... 174 1e-42
dbj|BAA77358.1| DNA-binding protein NtWRKY3 [Nicotiana tabacum] 172 3e-42
>ref|NP_680752.1| WRKY family transcription factor; protein id: At4g31550.1,
supported by cDNA: 11953., supported by cDNA:
gi_16604572 [Arabidopsis thaliana]
gi|23297314|gb|AAN12939.1| putative DNA-binding protein
[Arabidopsis thaliana]
Length = 325
Score = 178 bits (452), Expect = 5e-44
Identities = 87/121 (71%), Positives = 98/121 (80%), Gaps = 7/121 (5%)
Frame = -1
Query: 676 RCHEH------SGDPSGSNT-KCHCTKRRKNRVKKTIRVPAVSSKVADIPADEYSWRKYG 518
RC EH SG SGS KCHC K RKNR+K+T+RVPA+S+K+ADIP DEYSWRKYG
Sbjct: 196 RCLEHEHSESFSGKVSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYG 255
Query: 517 QKPIKGTPYPRGYYKCSTVRGCPARKHVERATDDPAMLIVTYEDEHDHGIQTAMHDNISG 338
QKPIKG+P+PRGYYKCST RGCPARKHVERA DDPAMLIVTYE EH H Q+AM +NIS
Sbjct: 256 QKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHN-QSAMQENISS 314
Query: 337 A 335
+
Sbjct: 315 S 315
>ref|NP_567878.2| WRKY family transcription factor; protein id: At4g31550.2,
supported by cDNA: gi_15384214 [Arabidopsis thaliana]
gi|7484935|pir||T10685 DNA-binding protein WRKY3 homolog
F3L17.120 - Arabidopsis thaliana
gi|5262766|emb|CAB45914.1| putaive DNA-binding protein
[Arabidopsis thaliana] gi|7270058|emb|CAB79873.1|
putaive DNA-binding protein [Arabidopsis thaliana]
gi|15384215|gb|AAK96194.1|AF404856_1 WRKY transcription
factor 11 [Arabidopsis thaliana]
gi|24762195|gb|AAN64164.1| putative WRKY family
transcription factor [Arabidopsis thaliana]
Length = 324
Score = 175 bits (444), Expect = 4e-43
Identities = 87/121 (71%), Positives = 99/121 (80%), Gaps = 7/121 (5%)
Frame = -1
Query: 676 RCHEH------SGDPSGSNT-KCHCTKRRKNRVKKTIRVPAVSSKVADIPADEYSWRKYG 518
RC EH SG SGS KCHC K+RKNR+K+T+RVPA+S+K+ADIP DEYSWRKYG
Sbjct: 196 RCLEHEHSESFSGKVSGSAYGKCHC-KKRKNRMKRTVRVPAISAKIADIPPDEYSWRKYG 254
Query: 517 QKPIKGTPYPRGYYKCSTVRGCPARKHVERATDDPAMLIVTYEDEHDHGIQTAMHDNISG 338
QKPIKG+P+PRGYYKCST RGCPARKHVERA DDPAMLIVTYE EH H Q+AM +NIS
Sbjct: 255 QKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHN-QSAMQENISS 313
Query: 337 A 335
+
Sbjct: 314 S 314
>gb|AAL24088.1| putative putaive DNA-binding protein [Arabidopsis thaliana]
Length = 325
Score = 175 bits (443), Expect = 6e-43
Identities = 86/121 (71%), Positives = 97/121 (80%), Gaps = 7/121 (5%)
Frame = -1
Query: 676 RCHEH------SGDPSGSNT-KCHCTKRRKNRVKKTIRVPAVSSKVADIPADEYSWRKYG 518
RC EH SG SGS KCHC K RKNR+K+T+RVPA+S+K+ADIP DEYSWRKYG
Sbjct: 196 RCLEHEHSESFSGKVSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYG 255
Query: 517 QKPIKGTPYPRGYYKCSTVRGCPARKHVERATDDPAMLIVTYEDEHDHGIQTAMHDNISG 338
QKPIKG+P+PRG YKCST RGCPARKHVERA DDPAMLIVTYE EH H Q+AM +NIS
Sbjct: 256 QKPIKGSPHPRGNYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHN-QSAMQENISS 314
Query: 337 A 335
+
Sbjct: 315 S 315
>ref|NP_565574.1| WRKY family transcription factor; protein id: At2g24570.1,
supported by cDNA: gi_15991743 [Arabidopsis thaliana]
gi|15991744|gb|AAL13049.1|AF425836_1 WRKY transcription
factor 17 [Arabidopsis thaliana]
gi|20197975|gb|AAD23889.2| putative WRKY-type DNA
binding protein [Arabidopsis thaliana]
Length = 321
Score = 174 bits (440), Expect = 1e-42
Identities = 87/129 (67%), Positives = 101/129 (77%), Gaps = 8/129 (6%)
Frame = -1
Query: 676 RCHEH------SGDPSGS-NTKCHCTKRRKNRVKKTIRVPAVSSKVADIPADEYSWRKYG 518
RC EH SG SGS N KCHC K RKNR+K+T+RVPAVS+K+ADIP DEYSWRKYG
Sbjct: 193 RCFEHDHSEGFSGKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYG 252
Query: 517 QKPIKGTPYPRGYYKCSTVRGCPARKHVERATDDPAMLIVTYEDEHDHGIQTAMHDNISG 338
QKPIKG+P+PRGYYKCST RGCPARKHVERA DD MLIVTYE EH H Q+ M ++++
Sbjct: 253 QKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRHH-QSTMQEHVTP 311
Query: 337 AV-GFVYES 314
+V G V+ S
Sbjct: 312 SVSGLVFGS 320
>dbj|BAA77358.1| DNA-binding protein NtWRKY3 [Nicotiana tabacum]
Length = 328
Score = 172 bits (437), Expect = 3e-42
Identities = 82/116 (70%), Positives = 93/116 (79%), Gaps = 6/116 (5%)
Frame = -1
Query: 676 RCHEH------SGDPSGSNTKCHCTKRRKNRVKKTIRVPAVSSKVADIPADEYSWRKYGQ 515
RC EH SG +GS KCHC K+RK+RVKK +R+PA+SS++ADIP DEYSWRKYGQ
Sbjct: 201 RCREHEPSEDISGKSNGSG-KCHC-KKRKSRVKKVVRIPAISSRIADIPGDEYSWRKYGQ 258
Query: 514 KPIKGTPYPRGYYKCSTVRGCPARKHVERATDDPAMLIVTYEDEHDHGIQTAMHDN 347
KPIKG+PYPRGYYKCS+VRGCPARKHVERA DDPAMLIVTYE EH H I +N
Sbjct: 259 KPIKGSPYPRGYYKCSSVRGCPARKHVERAMDDPAMLIVTYEGEHRHTIGAMQENN 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 668,630,869
Number of Sequences: 1393205
Number of extensions: 16528353
Number of successful extensions: 100140
Number of sequences better than 10.0: 389
Number of HSP's better than 10.0 without gapping: 69350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94916
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
