Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002230A_C01 KMC002230A_c01
(710 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_775073.1| NADH dehydrogenase subunit 4 [Triops cancriform... 35 0.79
ref|NP_508995.1| Putative nuclear protein, with 2 coiled coil-4 ... 34 2.3
gb|EAA17005.1| hypothetical protein [Plasmodium yoelii yoelii] 33 3.0
ref|NP_506775.1| Predicted CDS, putative protein family member, ... 33 3.9
gb|AAL07100.1| putative sec14 cytosolic factor [Arabidopsis thal... 33 3.9
>ref|NP_775073.1| NADH dehydrogenase subunit 4 [Triops cancriformis]
gi|27372202|dbj|BAC53602.1| NADH dehydrogenase subunit 4
[Triops cancriformis]
Length = 439
Score = 35.4 bits (80), Expect = 0.79
Identities = 24/90 (26%), Positives = 45/90 (49%)
Frame = +2
Query: 437 VNKMASFLYSTFLIEVILMQLYV*KHHILFLWKLSLTLLHSSTESSLSLSLQHHVLLVLN 616
VN + F++ F + L +L +W + L ++ S + + +S +L +LL +
Sbjct: 38 VNFVPDFMFENFSFSLTSYFLV-----LLLIWLIFLMIMSSYSLAKMSNNLIFLLLLFML 92
Query: 617 LLFS*LSLYCHKFFLFYQSFVESLLSSYLL 706
L+F L+ F +FY F SL+ ++LL
Sbjct: 93 LMFLVLTFLTSDFLMFYIMFECSLIPTFLL 122
>ref|NP_508995.1| Putative nuclear protein, with 2 coiled coil-4 domains, nematode
specific (93.0 kD) [Caenorhabditis elegans]
gi|7506439|pir||T16697 hypothetical protein R07E4.5 -
Caenorhabditis elegans gi|1049395|gb|AAA80404.1|
Hypothetical protein R07E4.5 [Caenorhabditis elegans]
Length = 817
Score = 33.9 bits (76), Expect = 2.3
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -1
Query: 677 RSFDKTRRTYDNTKTIRKKANSRQEEHGVEEREREKTQLTSA 552
R FDK +TY + +T++ K EEH V++ E EK +L SA
Sbjct: 417 REFDKDDKTYYDEETLKAKL----EEHAVKKLEEEKDKLQSA 454
>gb|EAA17005.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 510
Score = 33.5 bits (75), Expect = 3.0
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -1
Query: 173 NMNRNASCILLFHYFFQSSPTVNMYNSGSSIGRSLLLLVVLY 48
N+++N S L H+ FQ N+YNSG ++ R LL L+ LY
Sbjct: 376 NVDKNDSNFLFKHFIFQDQIIFNVYNSG-TVCRLLLPLLCLY 416
>ref|NP_506775.1| Predicted CDS, putative protein family member, nematode specific
[Caenorhabditis elegans] gi|7505861|pir||T23636
hypothetical protein M01B2.3 - Caenorhabditis elegans
gi|3878603|emb|CAB05561.1| Hypothetical protein M01B2.3
[Caenorhabditis elegans]
Length = 284
Score = 33.1 bits (74), Expect = 3.9
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Frame = +2
Query: 341 LGQLNY*MKHLFVVAELMLNFHLLHLSVSQG--PVNKMASFLYSTFLIEVI--------- 487
L LNY + LF A LN ++L Q P+N+ +F+Y F ++V+
Sbjct: 4 LSLLNYLLSILFATAAFFLNCYILFSIFYQKRIPINQSMTFIYWKFSVDVVYTLNLTTLM 63
Query: 488 LMQLYV*KHHILFLWKLSLTLLHSSTESSLSLSLQHHVLLVLNLLFS*LSLYCHKFFLFY 667
L + + L+ L+ +ST SL ++ +L + +Y HK+ +
Sbjct: 64 FYYLLISLSANFIIKNLTFWLVWASTSIGSMRSLLALLISFERVLATYFPIYFHKYRQRF 123
Query: 668 QSFVESLL 691
+F+ L+
Sbjct: 124 PNFIVLLI 131
>gb|AAL07100.1| putative sec14 cytosolic factor [Arabidopsis thaliana]
Length = 608
Score = 33.1 bits (74), Expect = 3.9
Identities = 19/31 (61%), Positives = 23/31 (73%), Gaps = 1/31 (3%)
Frame = -2
Query: 709 AKQITTKKAFNEALIKQEELM-TIQRQSGKK 620
A+ ITTKKA +EALI+QEEL+ I RQ K
Sbjct: 570 AELITTKKALHEALIRQEELLGYIDRQKEAK 600
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,672,662
Number of Sequences: 1393205
Number of extensions: 11723377
Number of successful extensions: 30710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 29022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30562
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
