Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002228A_C01 KMC002228A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB18289.1| P0409B08.16 [Oryza sativa (japonica cultivar-gro... 125 2e-28
ref|ZP_00070907.1| hypothetical protein [Trichodesmium erythraeu... 103 1e-21
gb|ZP_00109499.1| hypothetical protein [Nostoc punctiforme] 97 1e-19
ref|NP_484829.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 91 6e-18
ref|NP_441613.1| hypothetical protein [Synechocystis sp. PCC 680... 86 2e-16
>dbj|BAB18289.1| P0409B08.16 [Oryza sativa (japonica cultivar-group)]
Length = 326
Score = 125 bits (315), Expect = 2e-28
Identities = 61/86 (70%), Positives = 71/86 (81%), Gaps = 1/86 (1%)
Frame = -3
Query: 477 YTFLPCVLAGLSNAPQYMVMHSESTDQGCIVARDVDSLILPKDACGGAGTLAFARNG-KN 301
+TFLPCVLAGLSNAPQY++ + + D GCIVA DVDS+ILPKDACGG GT+AFAR KN
Sbjct: 228 HTFLPCVLAGLSNAPQYVMRRNGNMDNGCIVASDVDSVILPKDACGGDGTIAFARTATKN 287
Query: 300 KPLIIAVEENETVLDDTADKLGLEVL 223
KPLII V+ENETVLDDT DK +E +
Sbjct: 288 KPLIITVQENETVLDDTPDKFNIEAV 313
>ref|ZP_00070907.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 269
Score = 103 bits (257), Expect = 1e-21
Identities = 55/117 (47%), Positives = 78/117 (66%)
Frame = -3
Query: 477 YTFLPCVLAGLSNAPQYMVMHSESTDQGCIVARDVDSLILPKDACGGAGTLAFARNGKNK 298
YTFLPCVL GLS APQ + I A VD++++P ACGG+ ++F++ K
Sbjct: 152 YTFLPCVLVGLSRAPQLVTFRDGLALPNSIWAEQVDAVVVPATACGGSAVISFSQT---K 208
Query: 297 PLIIAVEENETVLDDTADKLGLEVLHVSNYWEAIGVIAAHKAGIDPYSLRRNKILNI 127
IIAV+EN+T + + +KLG++ L V++Y EA+GV+ AHKAGI P +L R KIL+I
Sbjct: 209 AQIIAVKENKTYMQVSPEKLGIKALEVNSYLEALGVLVAHKAGISPEAL-RPKILSI 264
>gb|ZP_00109499.1| hypothetical protein [Nostoc punctiforme]
Length = 354
Score = 96.7 bits (239), Expect = 1e-19
Identities = 50/111 (45%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Frame = -3
Query: 477 YTFLPCVLAGLSNAPQYMVMHSE-STDQGCIVARDVDSLILPKDACGGAGTLAFARNGKN 301
YTFLPCVL GLS APQ+++ ++++G I A +VD+ I P +ACG + L+ ++
Sbjct: 235 YTFLPCVLVGLSRAPQFIIDKGAIASEKGDIWADEVDAAIAPANACGSSALLSLSQR--- 291
Query: 300 KPLIIAVEENETVLDDTADKLGLEVLHVSNYWEAIGVIAAHKAGIDPYSLR 148
+ II VEEN+T++ LG++V+ V++Y EA+GV+ AHKAGI+P +LR
Sbjct: 292 RCQIITVEENKTLIKVPPQPLGIKVIQVNSYLEAVGVLVAHKAGINPSALR 342
>ref|NP_484829.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25381732|pir||AH1904
hypothetical protein alr0786 [imported] - Nostoc sp.
(strain PCC 7120) gi|17130131|dbj|BAB72743.1|
ORF_ID:alr0786~hypothetical protein [Nostoc sp. PCC
7120]
Length = 344
Score = 90.9 bits (224), Expect = 6e-18
Identities = 51/111 (45%), Positives = 72/111 (63%), Gaps = 2/111 (1%)
Frame = -3
Query: 477 YTFLPCVLAGLSNAPQYMVMHSESTDQGC--IVARDVDSLILPKDACGGAGTLAFARNGK 304
YTFLP VL GLS APQ+ ++ ES+ I A VD++I+P ACG + L+ ++
Sbjct: 236 YTFLPSVLVGLSRAPQF-ILEKESSQSHLEDIWAEQVDAIIMPATACGSSALLSLSQK-- 292
Query: 303 NKPLIIAVEENETVLDDTADKLGLEVLHVSNYWEAIGVIAAHKAGIDPYSL 151
+ II VEEN+T + TA LG++ + V +Y EA+G+I AHKAGI+P SL
Sbjct: 293 -QCQIITVEENQTQIQVTAQALGIKSIQVKSYLEAVGLIVAHKAGINPKSL 342
>ref|NP_441613.1| hypothetical protein [Synechocystis sp. PCC 6803]
gi|7470408|pir||S75834 hypothetical protein slr1287 -
Synechocystis sp. (strain PCC 6803)
gi|1653379|dbj|BAA18293.1| ORF_ID:slr1287~hypothetical
protein [Synechocystis sp. PCC 6803]
Length = 336
Score = 86.3 bits (212), Expect = 2e-16
Identities = 45/105 (42%), Positives = 68/105 (63%)
Frame = -3
Query: 477 YTFLPCVLAGLSNAPQYMVMHSESTDQGCIVARDVDSLILPKDACGGAGTLAFARNGKNK 298
YTFLPCVL GLS AP Y + + +RDV+++++P ACGG+ ++F+++
Sbjct: 222 YTFLPCVLMGLSRAPHYQ--RFPNAQGQTLWSRDVNAVVVPASACGGSALMSFSQSSAR- 278
Query: 297 PLIIAVEENETVLDDTADKLGLEVLHVSNYWEAIGVIAAHKAGID 163
IIAVE N T L+ + LG+ V+ V++Y EAIGV+ A +AGI+
Sbjct: 279 --IIAVENNSTQLEVYGEDLGISVVRVNSYLEAIGVLCADRAGIN 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,813,608
Number of Sequences: 1393205
Number of extensions: 9850118
Number of successful extensions: 23536
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 22961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23515
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
