Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002226A_C02 KMC002226A_c02
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178140.1| cytochrome c oxidase subunit, putative; protein... 190 1e-47
gb|AAM64516.1| cytochrome c oxidase subunit, putative [Arabidops... 190 1e-47
ref|NP_188185.1| putative cytochrome c oxidase subunit Vb; prote... 187 1e-46
dbj|BAA83574.1| ESTs AU057456(S21460),AU057455(S21460) correspon... 176 2e-43
pir||T03033 probable cytochrome-c oxidase (EC 1.9.3.1) Vb chain ... 171 6e-42
>ref|NP_178140.1| cytochrome c oxidase subunit, putative; protein id: At1g80230.1,
supported by cDNA: 29901. [Arabidopsis thaliana]
gi|25406645|pir||H96833 hypothetical protein F18B13.29
[imported] - Arabidopsis thaliana
gi|5902388|gb|AAD55490.1|AC009322_30 Unknown protein
[Arabidopsis thaliana]
Length = 171
Score = 190 bits (483), Expect = 1e-47
Identities = 85/99 (85%), Positives = 89/99 (89%)
Frame = -3
Query: 585 IATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDV 406
IATGHE+EELQA LEGR + +I+ P GPFGTKEAPAVVKSYYD RIVGCPGGEGEDEHDV
Sbjct: 73 IATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVGCPGGEGEDEHDV 132
Query: 405 VWFWLEKGKPHECPVCAQYFVLEVVGPGGPPDGHGDDHH 289
VWFWLEKGK ECPVC QYF LEVVGPGGPPDGHGDDHH
Sbjct: 133 VWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH 171
>gb|AAM64516.1| cytochrome c oxidase subunit, putative [Arabidopsis thaliana]
Length = 171
Score = 190 bits (483), Expect = 1e-47
Identities = 85/99 (85%), Positives = 89/99 (89%)
Frame = -3
Query: 585 IATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDV 406
IATGHE+EELQA LEGR + +I+ P GPFGTKEAPAVVKSYYD RIVGCPGGEGEDEHDV
Sbjct: 73 IATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVGCPGGEGEDEHDV 132
Query: 405 VWFWLEKGKPHECPVCAQYFVLEVVGPGGPPDGHGDDHH 289
VWFWLEKGK ECPVC QYF LEVVGPGGPPDGHGDDHH
Sbjct: 133 VWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH 171
>ref|NP_188185.1| putative cytochrome c oxidase subunit Vb; protein id: At3g15640.1,
supported by cDNA: 34224., supported by cDNA:
gi_14194104, supported by cDNA: gi_15777878 [Arabidopsis
thaliana] gi|11994336|dbj|BAB02295.1| cytochrome c
oxidase subunit Vb precursor-like protein [Arabidopsis
thaliana] gi|14194105|gb|AAK56247.1|AF367258_1
AT3g15640/MSJ11_4 [Arabidopsis thaliana]
gi|15777879|gb|AAL05900.1| AT3g15640/MSJ11_4
[Arabidopsis thaliana] gi|21592929|gb|AAM64879.1|
putative cytochrome c oxidase subunit Vb [Arabidopsis
thaliana]
Length = 176
Score = 187 bits (474), Expect = 1e-46
Identities = 84/103 (81%), Positives = 91/103 (87%), Gaps = 3/103 (2%)
Frame = -3
Query: 585 IATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDV 406
IATGHE+EEL+A LEGR + +I+ P GPFGTKEAPA+VKSYYDKRIVGCPGGEGEDEHDV
Sbjct: 74 IATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIVGCPGGEGEDEHDV 133
Query: 405 VWFWLEKGKPHECPVCAQYFVLEVVGPGGPPDGHG---DDHHH 286
VWFWLEKGK ECPVC QYF LEVVGPGGPPDGHG D+HHH
Sbjct: 134 VWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEHHH 176
>dbj|BAA83574.1| ESTs AU057456(S21460),AU057455(S21460) correspond to a region of
the predicted gene.~Similar to cytochrome c oxidase
subunit Vb precursor (D85381) [Oryza sativa (japonica
cultivar-group)]
Length = 154
Score = 176 bits (446), Expect = 2e-43
Identities = 78/102 (76%), Positives = 88/102 (85%), Gaps = 2/102 (1%)
Frame = -3
Query: 585 IATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDV 406
IATG EREE+ A L+G+ +++ PVGPFGTKEAPAV++SYY+KRIVGCPGGEGEDEHDV
Sbjct: 52 IATGLEREEIAAELQGKKRFDMDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEGEDEHDV 111
Query: 405 VWFWLEKGKPHECPVCAQYFVLEVVGPGGPPDGH--GDDHHH 286
VWFWLEKGKPHECPVC QYF LEV+G GG PDGH DDHHH
Sbjct: 112 VWFWLEKGKPHECPVCTQYFSLEVIGEGGDPDGHDDDDDHHH 153
>pir||T03033 probable cytochrome-c oxidase (EC 1.9.3.1) Vb chain precursor -
rice mitochondrion gi|1841355|dbj|BAA12797.1| cytochrome
c oxidase subunit Vb precursor [Oryza sativa (japonica
cultivar-group)] gi|21104683|dbj|BAB93273.1| cytochrome
c oxidase subunit Vb precursor [Oryza sativa (japonica
cultivar-group)]
Length = 169
Score = 171 bits (433), Expect = 6e-42
Identities = 76/102 (74%), Positives = 88/102 (85%), Gaps = 2/102 (1%)
Frame = -3
Query: 585 IATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDV 406
IATG EREEL A L+G +++ PVGPFGTKEAPAV++SYY+KRIVGCPGGEGEDEHDV
Sbjct: 68 IATGLEREELAAELKGEKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGEGEDEHDV 127
Query: 405 VWFWLEKGKPHECPVCAQYFVLEVVGPGGPPDGHGDD--HHH 286
VWFWL+K +PHECPVC+QYFVL+V+G GG PDGH DD HHH
Sbjct: 128 VWFWLKKDEPHECPVCSQYFVLKVIGDGGDPDGHDDDDEHHH 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,063,061
Number of Sequences: 1393205
Number of extensions: 13126417
Number of successful extensions: 43982
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 38677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43571
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
