Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002224A_C01 KMC002224A_c01
(676 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566034.1| expressed protein; protein id: At2g45060.1, sup... 132 6e-30
pir||A84886 hypothetical protein At2g45060 [imported] - Arabidop... 116 3e-25
ref|NP_143680.1| methyl-accepting chemotaxis protein [Pyrococcus... 33 2.7
ref|NP_313009.1| putative tape measure protein [Escherichia coli... 33 4.6
ref|NP_745096.1| transcriptional regulator, LysR family [Pseudom... 32 7.9
>ref|NP_566034.1| expressed protein; protein id: At2g45060.1, supported by cDNA:
151697., supported by cDNA: gi_15010567 [Arabidopsis
thaliana] gi|15010568|gb|AAK73943.1| At2g45060/T14P1.13
[Arabidopsis thaliana] gi|21553572|gb|AAM62665.1|
unknown [Arabidopsis thaliana]
gi|23505975|gb|AAN28847.1| At2g45060/T14P1.13
[Arabidopsis thaliana]
Length = 272
Score = 132 bits (331), Expect = 6e-30
Identities = 67/95 (70%), Positives = 79/95 (82%)
Frame = -3
Query: 674 AEGEKWEKSALHAEEQFLHGRTKLRQAGKQIRNVIDSAYKIERRAGGLKDILGELPRREA 495
AE EK E+ A AEE+F+ GR KLRQAGKQIR I SAYKIE++A GLKD+L ELP REA
Sbjct: 178 AESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSAYKIEKQAAGLKDVLKELPTREA 237
Query: 494 SHFRSQVSKLASEAKREKNSLTKEVSKISNYGISV 390
S FR+Q+SK ASE K+E+N+LTKEV+KISNYGISV
Sbjct: 238 SRFRTQISKRASEVKQERNALTKEVNKISNYGISV 272
>pir||A84886 hypothetical protein At2g45060 [imported] - Arabidopsis thaliana
Length = 278
Score = 116 bits (290), Expect = 3e-25
Identities = 67/125 (53%), Positives = 79/125 (62%), Gaps = 30/125 (24%)
Frame = -3
Query: 674 AEGEKWEKSALHAEEQFLHGRTKLR------------------------------QAGKQ 585
AE EK E+ A AEE+F+ GR KLR QAGKQ
Sbjct: 154 AESEKLERVATVAEEEFIRGRMKLRFMIQTNYNICILDLYINMNIMLTFFIFLHRQAGKQ 213
Query: 584 IRNVIDSAYKIERRAGGLKDILGELPRREASHFRSQVSKLASEAKREKNSLTKEVSKISN 405
IR I SAYKIE++A GLKD+L ELP REAS FR+Q+SK ASE K+E+N+LTKEV+KISN
Sbjct: 214 IRGAISSAYKIEKQAAGLKDVLKELPTREASRFRTQISKRASEVKQERNALTKEVNKISN 273
Query: 404 YGISV 390
YGISV
Sbjct: 274 YGISV 278
>ref|NP_143680.1| methyl-accepting chemotaxis protein [Pyrococcus horikoshii]
gi|7521202|pir||F71197 probable methyl-accepting
chemotaxis protein - Pyrococcus horikoshii
Length = 507
Score = 33.5 bits (75), Expect = 2.7
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = -3
Query: 674 AEGEKWEKSALHAEEQFLHGRTKLRQAGKQIRNVI----DSAYKIERRAGGLKDILGELP 507
++G+ E+ LHA+ F +R+ Q+RN++ D A +E RA L I E+
Sbjct: 162 SKGDVTEELTLHAKGDFESILNSMRKTIVQLRNLMKTVRDLAVTLETRADDLARISSEI- 220
Query: 506 RREASHFRSQVSKLASEAKREKNSLTK 426
+ + ++++EA+R++ ++T+
Sbjct: 221 TEAVNQVAEAIQQVSTEAQRQQENITQ 247
>ref|NP_313009.1| putative tape measure protein [Escherichia coli O157:H7]
gi|25391815|pir||F91251 probable tape measure protein
[imported] - Escherichia coli (strain O157:H7,
substrain RIMD 0509952) gi|13364458|dbj|BAB38405.1|
putative tape measure protein [Escherichia coli O157:H7]
Length = 691
Score = 32.7 bits (73), Expect = 4.6
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 548 RRAGGLKDILGELPRREASHFRSQVSKLASEAKREKNSLTKEVSKISN-YGI 396
RRAG D+LG +R + R + + S+ R + S+T + +ISN YG+
Sbjct: 47 RRAGQETDVLGSRMQRTLAGVRGSIRHVTSDFDRLQGSITGTIGRISNLYGM 98
>ref|NP_745096.1| transcriptional regulator, LysR family [Pseudomonas putida KT2440]
gi|24984559|gb|AAN68560.1|AE016488_4 transcriptional
regulator, LysR family [Pseudomonas putida KT2440]
Length = 296
Score = 32.0 bits (71), Expect = 7.9
Identities = 17/38 (44%), Positives = 21/38 (54%)
Frame = -3
Query: 674 AEGEKWEKSALHAEEQFLHGRTKLRQAGKQIRNVIDSA 561
AEGE++ SAL A E HGR LRQ Q+ + A
Sbjct: 60 AEGEQYLPSALIALEALRHGRDNLRQESAQLSGTLQVA 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,153,430
Number of Sequences: 1393205
Number of extensions: 11282454
Number of successful extensions: 26613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 25789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26606
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
