Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002221A_C01 KMC002221A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191263.1| responce reactor 4; protein id: At3g57040.1, su... 39 0.030
ref|NP_181663.1| putative two-component response regulator 3 pro... 35 0.43
emb|CAC82787.1| tissue factor [Oncorhynchus mykiss] 34 0.73
gb|AAM44381.1| hypothetical protein [Dictyostelium discoideum] g... 34 0.73
gb|AAL39914.1| SD01229p [Drosophila melanogaster] 27 1.1
>ref|NP_191263.1| responce reactor 4; protein id: At3g57040.1, supported by cDNA:
gi_19699060, supported by cDNA: gi_3273201 [Arabidopsis
thaliana] gi|11358759|pir||T47764 responce reactor 4 -
Arabidopsis thaliana gi|3273202|dbj|BAA31146.1| responce
reactor4 [Arabidopsis thaliana]
gi|6911874|emb|CAB72174.1| responce reactor 4
[Arabidopsis thaliana] gi|19699061|gb|AAL90898.1|
AT3g57040/F24I3_120 [Arabidopsis thaliana]
gi|22137112|gb|AAM91401.1| At3g57040/F24I3_120
[Arabidopsis thaliana]
Length = 234
Score = 38.9 bits (89), Expect = 0.030
Identities = 22/42 (52%), Positives = 29/42 (68%)
Frame = -1
Query: 376 VDQQQQALQQANNNKRKTMEQANSTPETDRTRPRYSGIATVV 251
V Q++Q L + NNKRK++E+ ST DR RPR+ GIAT V
Sbjct: 198 VQQEEQTL--SINNKRKSVEEGIST---DRARPRFDGIATAV 234
>ref|NP_181663.1| putative two-component response regulator 3 protein; protein id:
At2g41310.1, supported by cDNA: gi_18491268 [Arabidopsis
thaliana] gi|11358760|pir||T48853 response reactor 3
[imported] - Arabidopsis thaliana
gi|3273200|dbj|BAA31145.1| responce reactor3
[Arabidopsis thaliana] gi|3894192|gb|AAC78541.1|
putative two-component response regulator 3 protein
[Arabidopsis thaliana] gi|18491269|gb|AAL69459.1|
At2g41310/F13H10.14 [Arabidopsis thaliana]
Length = 225
Score = 35.0 bits (79), Expect = 0.43
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = -1
Query: 439 SKSQMISNKHQSSNM-LQPESEVDQQQQALQQANNNKRKTMEQANSTPETDRTRPRYSGI 263
SK ++ + +SS + + P + + +Q ++NKRK ME+ ST DR+RP+Y+ I
Sbjct: 165 SKPEIEEEEEESSVIEILPLHQEIESEQLEPMLSSNKRKAMEEVVST---DRSRPKYNDI 221
Query: 262 ATVV 251
T V
Sbjct: 222 TTSV 225
>emb|CAC82787.1| tissue factor [Oncorhynchus mykiss]
Length = 294
Score = 34.3 bits (77), Expect = 0.73
Identities = 12/41 (29%), Positives = 21/41 (50%)
Frame = +3
Query: 255 TVAMPLYLGLVLSVSGVLLACSMVFLLLLLACCSACCC*ST 377
T+ G++ G++LA ++ + L + CC CCC T
Sbjct: 241 TIFEEFSFGVISGAIGIMLAIFIILITLTVVCCKRCCCKKT 281
>gb|AAM44381.1| hypothetical protein [Dictyostelium discoideum]
gi|28828369|gb|AAO51017.1| similar to Involved in global
regulation of transcription; Snf5p [Saccharomyces
cerevisiae] [Dictyostelium discoideum]
Length = 71
Score = 34.3 bits (77), Expect = 0.73
Identities = 14/54 (25%), Positives = 30/54 (54%)
Frame = -1
Query: 454 IIIFHSKSQMISNKHQSSNMLQPESEVDQQQQALQQANNNKRKTMEQANSTPET 293
I+I++++ Q + Q Q + + QQQQ QQ +++ +Q +S+P++
Sbjct: 4 ILIYYNQYQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSSPQS 57
>gb|AAL39914.1| SD01229p [Drosophila melanogaster]
Length = 1928
Score = 27.3 bits (59), Expect(2) = 1.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 467 VQQHHHHLPQQIPNDQQQ 414
+QQHH HL QQ QQQ
Sbjct: 1547 IQQHHQHLQQQHQAQQQQ 1564
Score = 25.0 bits (53), Expect(2) = 1.1
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -1
Query: 439 SKSQMISNKHQSSNMLQPESEVDQQQQALQQANNNKRKTMEQANSTPETDRTR--PRYSG 266
++ Q +HQ Q + + QQQQ QQ + + + T+ T+ P+ G
Sbjct: 1560 AQQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQKLKQSQAASAGANNKATNLTKDSPKQKG 1619
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,946,000
Number of Sequences: 1393205
Number of extensions: 8548798
Number of successful extensions: 47118
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 40127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46014
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
