Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002216A_C03 KMC002216A_c03
(701 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193777.1| putative snRNP protein; protein id: At4g20440.1... 72 9e-19
ref|NP_199263.1| putative protein; protein id: At5g44500.1, supp... 70 3e-18
gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana] 68 1e-17
gb|AAF37725.1|AF238235_1 diaphanous protein [Entamoeba histolytica] 60 2e-13
gb|AAF37724.2|AF238234_1 diaphanous protein [Entamoeba histolytica] 60 2e-13
>ref|NP_193777.1| putative snRNP protein; protein id: At4g20440.1, supported by cDNA:
36005. [Arabidopsis thaliana] gi|7488342|pir||T10586
small nuclear ribonucleoprotein-associated protein
homolog F9F13.90 - Arabidopsis thaliana
gi|5262167|emb|CAB45810.1| putative snRNP protein
[Arabidopsis thaliana] gi|7268840|emb|CAB79044.1|
putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein
[Arabidopsis thaliana] gi|28827492|gb|AAO50590.1|
putative snRNP protein [Arabidopsis thaliana]
Length = 257
Score = 72.4 bits (176), Expect(2) = 9e-19
Identities = 33/44 (75%), Positives = 34/44 (77%)
Frame = -1
Query: 584 GQMMRGPPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPGHAP 453
G MMRGPPPPP GM GPPPPRPGMPP PGG +APPRPG P
Sbjct: 213 GGMMRGPPPPPH-GMQGPPPPRPGMPPAPGG---FAPPRPGMPP 252
Score = 43.1 bits (100), Expect(2) = 4e-06
Identities = 27/62 (43%), Positives = 28/62 (44%), Gaps = 19/62 (30%)
Frame = -1
Query: 578 MMRGPPPP-----PRPGMPGPPPP----RP----------GMPPPPGGAPVYAPPRPGHA 456
M RGPPPP P GPPPP RP G PPPP G PPRPG
Sbjct: 178 MGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIPPPGGMMRGPPPPPHGMQGPPPPRPGMP 237
Query: 455 PS 450
P+
Sbjct: 238 PA 239
Score = 43.1 bits (100), Expect(2) = 9e-19
Identities = 24/57 (42%), Positives = 26/57 (45%), Gaps = 21/57 (36%)
Frame = -2
Query: 697 PPQPMPPGSFAPRPG----------GPPPQYGV-----------PPQFGQRPMGPPP 590
PP PPG P P GPPP YG+ PPQ+GQRPM PPP
Sbjct: 156 PPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIPPP 212
Score = 34.3 bits (77), Expect(2) = 0.010
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -1
Query: 584 GQMMRGPPPPPRPGMPGP----PPPRPGMPPPPGGAPVYAPPRPGHAP 453
GQM+ PPPP G P PPP GM PPP PP+ G P
Sbjct: 163 GQML---PPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRP 207
Score = 29.6 bits (65), Expect(2) = 4e-06
Identities = 19/42 (45%), Positives = 21/42 (49%), Gaps = 4/42 (9%)
Frame = -2
Query: 697 PPQPMPPGSFAPRPGGPPPQYGVPPQFGQR--PM--GPPPPW 584
P PP AP PP Q PP FG + PM GPPPP+
Sbjct: 145 PQISRPPQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPY 186
Score = 26.6 bits (57), Expect(2) = 0.010
Identities = 15/38 (39%), Positives = 16/38 (41%), Gaps = 7/38 (18%)
Frame = -2
Query: 676 GSFAPRPGGPPPQYGVPPQFGQRP-------MGPPPPW 584
G P PG PQ PPQ P M PPPP+
Sbjct: 134 GVGGPAPGMMQPQISRPPQLSAPPIIRPPGQMLPPPPF 171
>ref|NP_199263.1| putative protein; protein id: At5g44500.1, supported by cDNA:
10879., supported by cDNA: gi_14596136, supported by
cDNA: gi_18377437 [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| contains similarity to small
nuclear ribonucleoprotein~gene_id:MFC16.18 [Arabidopsis
thaliana] gi|14596137|gb|AAK68796.1| Unknown protein
[Arabidopsis thaliana] gi|18377438|gb|AAL66885.1|
unknown protein [Arabidopsis thaliana]
Length = 254
Score = 69.7 bits (169), Expect(2) = 3e-18
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = -1
Query: 584 GQMMRGPPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPGHAPS 450
G MMRGPPPP GM GPPP RPGMPPP GGAP++APP PG P+
Sbjct: 204 GGMMRGPPPPH--GMQGPPPSRPGMPPP-GGAPMFAPPHPGMPPA 245
Score = 43.9 bits (102), Expect(2) = 3e-18
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 16/53 (30%)
Frame = -2
Query: 697 PPQPM-PPGSFAPRP-----GGPPPQYGV--------PPQFG--QRPMGPPPP 587
PPQ + PPG P+P GGPPP YG+ PPQ+G QRPM PPP
Sbjct: 151 PPQIIRPPGQMPPQPPFAGQGGPPPPYGMRPPYPGPPPPQYGGQQRPMMIPPP 203
>gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 68.2 bits (165), Expect(2) = 1e-17
Identities = 31/45 (68%), Positives = 35/45 (76%)
Frame = -1
Query: 584 GQMMRGPPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPGHAPS 450
G MMRGPPPP GM GPPP RPG+PPP GGAP++APP PG P+
Sbjct: 204 GGMMRGPPPPH--GMQGPPPSRPGIPPP-GGAPMFAPPHPGMPPA 245
Score = 43.9 bits (102), Expect(2) = 1e-17
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 16/53 (30%)
Frame = -2
Query: 697 PPQPM-PPGSFAPRP-----GGPPPQYGV--------PPQFG--QRPMGPPPP 587
PPQ + PPG P+P GGPPP YG+ PPQ+G QRPM PPP
Sbjct: 151 PPQIIRPPGQMPPQPPFAGQGGPPPPYGMRPPYPGPPPPQYGGQQRPMMIPPP 203
>gb|AAF37725.1|AF238235_1 diaphanous protein [Entamoeba histolytica]
Length = 1096
Score = 60.1 bits (144), Expect(2) = 2e-13
Identities = 26/38 (68%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPP---RPGMPPPPGGAPVYAPPRPG 462
PPPPP PGMPG PPP PGMPPPP G P PP PG
Sbjct: 528 PPPPPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPPG 565
Score = 59.3 bits (142), Expect(2) = 1e-12
Identities = 24/35 (68%), Positives = 24/35 (68%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPG 462
PPPP PGMP PPP PGMPPPP G P PP PG
Sbjct: 541 PPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPPG 575
Score = 59.3 bits (142), Expect(2) = 2e-12
Identities = 24/35 (68%), Positives = 24/35 (68%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPG 462
PPPP PGMP PPP PGMPPPP G P PP PG
Sbjct: 551 PPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPPG 585
Score = 59.3 bits (142), Expect = 5e-08
Identities = 26/40 (65%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPP-----RPGMPPPPGGAPVYAPPRPG 462
PPPPP PGMPG PPP PGMPPPP G P PP PG
Sbjct: 516 PPPPPPPGMPGMPPPPPPPGMPGMPPPPPGMPGMPPPPPG 555
Score = 55.8 bits (133), Expect(2) = 6e-12
Identities = 25/41 (60%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Frame = -1
Query: 566 PPPPPRPGMPG------PPPPRPGMPPPPGGAPVYAPPRPG 462
PPPP PGMPG PPP PGMPPPP G P PP PG
Sbjct: 581 PPPPGMPGMPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPPG 621
Score = 53.9 bits (128), Expect(2) = 2e-10
Identities = 27/47 (57%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Frame = -1
Query: 575 MRGPPPPPRPGMPGPPPP---------RPGMPPPPGGAPVYAPPRPG 462
M G PPPP PGMPG PPP PGMPPPP G P PP PG
Sbjct: 566 MPGMPPPP-PGMPGMPPPPPGMPGMPGMPGMPPPPPGMPGMPPPPPG 611
Score = 53.5 bits (127), Expect = 3e-06
Identities = 24/38 (63%), Positives = 24/38 (63%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPGHAP 453
PPPP PGMP PPP PGMPPPP G P P PG P
Sbjct: 561 PPPPGMPGMPPPPPGMPGMPPPPPGMP-GMPGMPGMPP 597
Score = 53.1 bits (126), Expect = 4e-06
Identities = 26/45 (57%), Positives = 26/45 (57%), Gaps = 10/45 (22%)
Frame = -1
Query: 566 PPPPPRPGMPG-----PPPPRPGM-----PPPPGGAPVYAPPRPG 462
PPPP PGMPG PPPP PGM PPPP G P PP PG
Sbjct: 501 PPPPGMPGMPGMPGMPPPPPPPGMPGMPPPPPPPGMPGMPPPPPG 545
Score = 52.0 bits (123), Expect(2) = 1e-10
Identities = 21/34 (61%), Positives = 22/34 (63%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRP 465
PPPP PGMP PPP PGMPPPP G + P P
Sbjct: 597 PPPPGMPGMPPPPPGMPGMPPPPPGGFGFRPAAP 630
Score = 48.5 bits (114), Expect(2) = 7e-09
Identities = 23/32 (71%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
Frame = -1
Query: 575 MRGPPPPPRPGMPGPPPPRPGMP----PPPGG 492
M G PPPP PGMPG PPP PGMP PPPGG
Sbjct: 592 MPGMPPPP-PGMPGMPPPPPGMPGMPPPPPGG 622
Score = 47.4 bits (111), Expect = 2e-04
Identities = 23/36 (63%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGM--PPPPGGAPVYAPPRP 465
PPPPP PGMPG P PGM PPPP G P PP P
Sbjct: 498 PPPPPPPGMPGMPG-MPGMPPPPPPPGMPGMPPPPP 532
Score = 41.2 bits (95), Expect = 0.014
Identities = 19/37 (51%), Positives = 20/37 (53%)
Frame = -1
Query: 563 PPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPGHAP 453
PPPP PG PPP PPPPG + V PP P P
Sbjct: 475 PPPPPPGASSIPPP----PPPPGASSVPPPPPPPGMP 507
Score = 37.7 bits (86), Expect(2) = 2e-13
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = -2
Query: 697 PPQPMPPGSFAPRPGGPPPQYGVPPQFGQRPMGPPPP 587
PP P PPG+ + P PPP G+P G M PPPP
Sbjct: 486 PPPPPPPGASSVPP--PPPPPGMPGMPGMPGMPPPPP 520
Score = 36.6 bits (83), Expect(2) = 6e-12
Identities = 20/41 (48%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
Frame = -2
Query: 697 PPQPMPPGSFAPRPGGPPPQYGV----PPQFGQRPMGPPPP 587
PP P PPG PG PPP G+ PP G M PPPP
Sbjct: 528 PPPPPPPGM----PGMPPPPPGMPGMPPPPPGMPGMPPPPP 564
Score = 36.6 bits (83), Expect = 0.35
Identities = 19/36 (52%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGMPPPPG--GAPVYAPPRP 465
PPPPP PG PPP P P PG G P PP P
Sbjct: 486 PPPPPPPGASSVPPPPPP-PGMPGMPGMPGMPPPPP 520
Score = 36.2 bits (82), Expect(2) = 1e-10
Identities = 19/40 (47%), Positives = 20/40 (49%), Gaps = 3/40 (7%)
Frame = -2
Query: 697 PPQPMPPGSFAP---RPGGPPPQYGVPPQFGQRPMGPPPP 587
PP P PG P PG PPP G+P G M PPPP
Sbjct: 561 PPPPGMPGMPPPPPGMPGMPPPPPGMPGMPGMPGMPPPPP 600
Score = 35.4 bits (80), Expect(2) = 1e-12
Identities = 19/37 (51%), Positives = 19/37 (51%)
Frame = -2
Query: 697 PPQPMPPGSFAPRPGGPPPQYGVPPQFGQRPMGPPPP 587
PP P PPG PG PPP PP G M PPPP
Sbjct: 516 PPPPPPPGM----PGMPPP----PPPPGMPGMPPPPP 544
Score = 35.0 bits (79), Expect(2) = 2e-12
Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 697 PPQPMPPG--SFAPRPGGPPPQYGVPPQFGQRPMGPPPP 587
PP P PPG PG PPP PP G M PPPP
Sbjct: 498 PPPPPPPGMPGMPGMPGMPPP----PPPPGMPGMPPPPP 532
Score = 34.3 bits (77), Expect = 1.7
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Frame = -1
Query: 593 SALGQMMRGPPPPPRPGMPGPPPPRP-----GMPPPPGGAPVYAPPRPGHAP 453
S G PPPPP PPPP P PPPP P PG P
Sbjct: 466 SVSGTSSLAPPPPPPGASSIPPPPPPPGASSVPPPPPPPGMPGMPGMPGMPP 517
Score = 33.5 bits (75), Expect(2) = 2e-10
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -2
Query: 700 GPPQPMPPGSFAPRPGGPPPQYGVPPQFGQRPMGPPPP 587
G P P PP P PP G+PP P PPPP
Sbjct: 526 GMPPPPPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPP 563
Score = 33.5 bits (75), Expect(2) = 7e-09
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Frame = -2
Query: 697 PPQPMPPGSFAP---RPGGPPPQYGVP----PQFGQRPMGPPPP 587
PP P PG P PG PPP G+P P G M PPPP
Sbjct: 541 PPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPP 584
Score = 32.7 bits (73), Expect = 5.0
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -2
Query: 697 PPQPMPPGSFAPRPGGPPPQYGVP----PQFGQRPMGPPPP 587
PP P PG PG PPP G+P P G M PPPP
Sbjct: 581 PPPPGMPG-MPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPP 620
>gb|AAF37724.2|AF238234_1 diaphanous protein [Entamoeba histolytica]
Length = 967
Score = 60.1 bits (144), Expect(2) = 2e-13
Identities = 26/38 (68%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPP---RPGMPPPPGGAPVYAPPRPG 462
PPPPP PGMPG PPP PGMPPPP G P PP PG
Sbjct: 495 PPPPPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPPG 532
Score = 59.3 bits (142), Expect(2) = 1e-12
Identities = 24/35 (68%), Positives = 24/35 (68%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPG 462
PPPP PGMP PPP PGMPPPP G P PP PG
Sbjct: 508 PPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPPG 542
Score = 59.3 bits (142), Expect(2) = 2e-12
Identities = 24/35 (68%), Positives = 24/35 (68%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPG 462
PPPP PGMP PPP PGMPPPP G P PP PG
Sbjct: 518 PPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPPG 552
Score = 59.3 bits (142), Expect = 5e-08
Identities = 26/40 (65%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPP-----RPGMPPPPGGAPVYAPPRPG 462
PPPPP PGMPG PPP PGMPPPP G P PP PG
Sbjct: 483 PPPPPPPGMPGMPPPPPPPGMPGMPPPPPGMPGMPPPPPG 522
Score = 55.8 bits (133), Expect(2) = 6e-12
Identities = 25/41 (60%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Frame = -1
Query: 566 PPPPPRPGMPG------PPPPRPGMPPPPGGAPVYAPPRPG 462
PPPP PGMPG PPP PGMPPPP G P PP PG
Sbjct: 548 PPPPGMPGMPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPPG 588
Score = 53.9 bits (128), Expect(2) = 2e-10
Identities = 27/47 (57%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Frame = -1
Query: 575 MRGPPPPPRPGMPGPPPP---------RPGMPPPPGGAPVYAPPRPG 462
M G PPPP PGMPG PPP PGMPPPP G P PP PG
Sbjct: 533 MPGMPPPP-PGMPGMPPPPPGMPGMPGMPGMPPPPPGMPGMPPPPPG 578
Score = 53.5 bits (127), Expect = 3e-06
Identities = 24/38 (63%), Positives = 24/38 (63%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPGHAP 453
PPPP PGMP PPP PGMPPPP G P P PG P
Sbjct: 528 PPPPGMPGMPPPPPGMPGMPPPPPGMP-GMPGMPGMPP 564
Score = 53.1 bits (126), Expect = 4e-06
Identities = 26/45 (57%), Positives = 26/45 (57%), Gaps = 10/45 (22%)
Frame = -1
Query: 566 PPPPPRPGMPG-----PPPPRPGM-----PPPPGGAPVYAPPRPG 462
PPPP PGMPG PPPP PGM PPPP G P PP PG
Sbjct: 468 PPPPGMPGMPGMPGMPPPPPPPGMPGMPPPPPPPGMPGMPPPPPG 512
Score = 52.0 bits (123), Expect(2) = 1e-10
Identities = 21/34 (61%), Positives = 22/34 (63%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRP 465
PPPP PGMP PPP PGMPPPP G + P P
Sbjct: 564 PPPPGMPGMPPPPPGMPGMPPPPPGGFGFRPAAP 597
Score = 48.5 bits (114), Expect(2) = 7e-09
Identities = 23/32 (71%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
Frame = -1
Query: 575 MRGPPPPPRPGMPGPPPPRPGMP----PPPGG 492
M G PPPP PGMPG PPP PGMP PPPGG
Sbjct: 559 MPGMPPPP-PGMPGMPPPPPGMPGMPPPPPGG 589
Score = 47.4 bits (111), Expect = 2e-04
Identities = 23/36 (63%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGM--PPPPGGAPVYAPPRP 465
PPPPP PGMPG P PGM PPPP G P PP P
Sbjct: 465 PPPPPPPGMPGMPG-MPGMPPPPPPPGMPGMPPPPP 499
Score = 41.2 bits (95), Expect = 0.014
Identities = 19/37 (51%), Positives = 20/37 (53%)
Frame = -1
Query: 563 PPPPRPGMPGPPPPRPGMPPPPGGAPVYAPPRPGHAP 453
PPPP PG PPP PPPPG + V PP P P
Sbjct: 442 PPPPPPGASSIPPP----PPPPGASSVPPPPPPPGMP 474
Score = 37.7 bits (86), Expect(2) = 2e-13
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = -2
Query: 697 PPQPMPPGSFAPRPGGPPPQYGVPPQFGQRPMGPPPP 587
PP P PPG+ + P PPP G+P G M PPPP
Sbjct: 453 PPPPPPPGASSVPP--PPPPPGMPGMPGMPGMPPPPP 487
Score = 36.6 bits (83), Expect(2) = 6e-12
Identities = 20/41 (48%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
Frame = -2
Query: 697 PPQPMPPGSFAPRPGGPPPQYGV----PPQFGQRPMGPPPP 587
PP P PPG PG PPP G+ PP G M PPPP
Sbjct: 495 PPPPPPPGM----PGMPPPPPGMPGMPPPPPGMPGMPPPPP 531
Score = 36.6 bits (83), Expect = 0.35
Identities = 19/36 (52%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 566 PPPPPRPGMPGPPPPRPGMPPPPG--GAPVYAPPRP 465
PPPPP PG PPP P P PG G P PP P
Sbjct: 453 PPPPPPPGASSVPPPPPP-PGMPGMPGMPGMPPPPP 487
Score = 36.2 bits (82), Expect(2) = 1e-10
Identities = 19/40 (47%), Positives = 20/40 (49%), Gaps = 3/40 (7%)
Frame = -2
Query: 697 PPQPMPPGSFAP---RPGGPPPQYGVPPQFGQRPMGPPPP 587
PP P PG P PG PPP G+P G M PPPP
Sbjct: 528 PPPPGMPGMPPPPPGMPGMPPPPPGMPGMPGMPGMPPPPP 567
Score = 35.4 bits (80), Expect(2) = 1e-12
Identities = 19/37 (51%), Positives = 19/37 (51%)
Frame = -2
Query: 697 PPQPMPPGSFAPRPGGPPPQYGVPPQFGQRPMGPPPP 587
PP P PPG PG PPP PP G M PPPP
Sbjct: 483 PPPPPPPGM----PGMPPP----PPPPGMPGMPPPPP 511
Score = 35.0 bits (79), Expect(2) = 2e-12
Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 697 PPQPMPPG--SFAPRPGGPPPQYGVPPQFGQRPMGPPPP 587
PP P PPG PG PPP PP G M PPPP
Sbjct: 465 PPPPPPPGMPGMPGMPGMPPP----PPPPGMPGMPPPPP 499
Score = 34.3 bits (77), Expect = 1.7
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Frame = -1
Query: 593 SALGQMMRGPPPPPRPGMPGPPPPRP-----GMPPPPGGAPVYAPPRPGHAP 453
S G PPPPP PPPP P PPPP P PG P
Sbjct: 433 SVSGTSSLAPPPPPPGASSIPPPPPPPGASSVPPPPPPPGMPGMPGMPGMPP 484
Score = 33.5 bits (75), Expect(2) = 2e-10
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -2
Query: 700 GPPQPMPPGSFAPRPGGPPPQYGVPPQFGQRPMGPPPP 587
G P P PP P PP G+PP P PPPP
Sbjct: 493 GMPPPPPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPP 530
Score = 33.5 bits (75), Expect(2) = 7e-09
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Frame = -2
Query: 697 PPQPMPPGSFAP---RPGGPPPQYGVP----PQFGQRPMGPPPP 587
PP P PG P PG PPP G+P P G M PPPP
Sbjct: 508 PPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPP 551
Score = 32.7 bits (73), Expect = 5.0
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -2
Query: 697 PPQPMPPGSFAPRPGGPPPQYGVP----PQFGQRPMGPPPP 587
PP P PG PG PPP G+P P G M PPPP
Sbjct: 548 PPPPGMPG-MPGMPGMPPPPPGMPGMPPPPPGMPGMPPPPP 587
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 760,162,636
Number of Sequences: 1393205
Number of extensions: 24141896
Number of successful extensions: 533303
Number of sequences better than 10.0: 8117
Number of HSP's better than 10.0 without gapping: 115199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339533
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
