Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002211A_C01 KMC002211A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65777.1| putative pollen surface protein [Arabidopsis thal... 105 5e-22
ref|NP_193009.1| fasciclin-like arabinogalactan-protein (FLA2); ... 104 9e-22
gb|AAK20858.1|AF333971_1 fasciclin-like arabinogalactan-protein ... 104 9e-22
gb|AAM67371.1| unknown [Arabidopsis thaliana] 94 2e-18
ref|NP_200384.1| fasciclin-like arabinogalactan-protein (FLA1); ... 94 2e-18
>gb|AAM65777.1| putative pollen surface protein [Arabidopsis thaliana]
Length = 403
Score = 105 bits (262), Expect = 5e-22
Identities = 57/99 (57%), Positives = 71/99 (71%)
Frame = -2
Query: 643 GANKYDFTVQNDGEDVNLETKVNTAGIIGTVIDQDPFVVYKISKVLMPRELFKGVTEKTV 464
G NK+DFTVQNDGEDV LET V TA ++GT+ DQ+P +VYKI KVL+PRE++K V KT
Sbjct: 281 GNNKFDFTVQNDGEDVTLETDVVTAKVMGTLKDQEPLIVYKIDKVLLPREIYKAV--KTS 338
Query: 463 SPAESPKPAKKKSKSTKKGNADDDAADSPADGPADDDSD 347
+PA PK +KKK K NA+ DA AD P+DDD +
Sbjct: 339 APA--PKSSKKKPK-----NAEADADGPSADAPSDDDGE 370
>ref|NP_193009.1| fasciclin-like arabinogalactan-protein (FLA2); protein id:
At4g12730.1, supported by cDNA: 4620., supported by
cDNA: gi_13377777, supported by cDNA: gi_16974608
[Arabidopsis thaliana] gi|7488019|pir||T06631 pollen
surface protein homolog T20K18.80 - Arabidopsis thaliana
gi|4586249|emb|CAB40990.1| putative pollen surface
protein [Arabidopsis thaliana]
gi|7267974|emb|CAB78315.1| putative pollen surface
protein [Arabidopsis thaliana]
gi|16974609|gb|AAL31207.1| AT4g12730/T20K18_80
[Arabidopsis thaliana] gi|22655474|gb|AAM98329.1|
At4g12730/T20K18_80 [Arabidopsis thaliana]
Length = 403
Score = 104 bits (260), Expect = 9e-22
Identities = 57/97 (58%), Positives = 70/97 (71%)
Frame = -2
Query: 643 GANKYDFTVQNDGEDVNLETKVNTAGIIGTVIDQDPFVVYKISKVLMPRELFKGVTEKTV 464
G NK+DFTVQNDGEDV LET V TA ++GT+ DQ+P +VYKI KVL+PRE++K V KT
Sbjct: 281 GNNKFDFTVQNDGEDVTLETDVVTAKVMGTLKDQEPLIVYKIDKVLLPREIYKAV--KTS 338
Query: 463 SPAESPKPAKKKSKSTKKGNADDDAADSPADGPADDD 353
+PA PK +KKK K NA+ DA AD P+DDD
Sbjct: 339 APA--PKSSKKKPK-----NAEADADGPSADAPSDDD 368
>gb|AAK20858.1|AF333971_1 fasciclin-like arabinogalactan-protein 2 [Arabidopsis thaliana]
Length = 403
Score = 104 bits (260), Expect = 9e-22
Identities = 57/97 (58%), Positives = 70/97 (71%)
Frame = -2
Query: 643 GANKYDFTVQNDGEDVNLETKVNTAGIIGTVIDQDPFVVYKISKVLMPRELFKGVTEKTV 464
G NK+DFTVQNDGEDV LET V TA ++GT+ DQ+P +VYKI KVL+PRE++K V KT
Sbjct: 281 GNNKFDFTVQNDGEDVTLETDVVTAKVMGTLKDQEPLIVYKIDKVLLPREIYKAV--KTS 338
Query: 463 SPAESPKPAKKKSKSTKKGNADDDAADSPADGPADDD 353
+PA PK +KKK K NA+ DA AD P+DDD
Sbjct: 339 APA--PKSSKKKPK-----NAEADADGPSADAPSDDD 368
>gb|AAM67371.1| unknown [Arabidopsis thaliana]
Length = 193
Score = 94.0 bits (232), Expect = 2e-18
Identities = 53/117 (45%), Positives = 74/117 (62%), Gaps = 15/117 (12%)
Frame = -2
Query: 643 GANKYDFTVQNDGEDVNLETKVNTAGIIGTVIDQDPFVVYKISKVLMPRELFKGVTEKTV 464
GANK++ TVQNDGE V L+T++NT I+ T+ID+ P +Y KVL+P+ELFK +
Sbjct: 47 GANKFELTVQNDGEKVTLKTRINTVKIVDTLIDEQPLAIYATDKVLLPKELFKASAVEAP 106
Query: 463 SP---------AESPKPAKKKSKSTKKGNA---DDDA---ADSPADGPADDDSDNQT 338
+P A+SPK AK K+K KK A D+D +DSPA+GP D ++D+ T
Sbjct: 107 APAPAPEDGDVADSPKAAKGKAKGKKKKAAPSPDNDPFGDSDSPAEGP-DGEADDAT 162
>ref|NP_200384.1| fasciclin-like arabinogalactan-protein (FLA1); protein id:
At5g55730.1, supported by cDNA: gi_13377775 [Arabidopsis
thaliana] gi|9758607|dbj|BAB09240.1|
gene_id:MDF20.17~pir||T06631~similar to unknown protein
[Arabidopsis thaliana]
gi|13377776|gb|AAK20857.1|AF333970_1 fasciclin-like
arabinogalactan-protein 1 [Arabidopsis thaliana]
gi|27311863|gb|AAO00897.1| putative protein [Arabidopsis
thaliana]
Length = 424
Score = 94.0 bits (232), Expect = 2e-18
Identities = 53/117 (45%), Positives = 74/117 (62%), Gaps = 15/117 (12%)
Frame = -2
Query: 643 GANKYDFTVQNDGEDVNLETKVNTAGIIGTVIDQDPFVVYKISKVLMPRELFKGVTEKTV 464
GANK++ TVQNDGE V L+T++NT I+ T+ID+ P +Y KVL+P+ELFK +
Sbjct: 278 GANKFELTVQNDGEKVTLKTRINTVKIVDTLIDEQPLAIYATDKVLLPKELFKASAVEAP 337
Query: 463 SP---------AESPKPAKKKSKSTKKGNA---DDDA---ADSPADGPADDDSDNQT 338
+P A+SPK AK K+K KK A D+D +DSPA+GP D ++D+ T
Sbjct: 338 APAPAPEDGDVADSPKAAKGKAKGKKKKAAPSPDNDPFGDSDSPAEGP-DGEADDAT 393
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,026,307
Number of Sequences: 1393205
Number of extensions: 11798823
Number of successful extensions: 50703
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 42441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49421
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
