Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002210A_C01 KMC002210A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB32997.1| putative zinc-finger protein [Oryza sativa (japo... 58 7e-08
pir||JE0116 zinc-finger protein R2931 [imported] - rice gi|36183... 56 2e-07
sp|Q9SYM2|COL7_ARATH Zinc finger protein constans-like 7 gi|2540... 50 1e-05
ref|NP_565183.1| CONSTANS B-box zinc finger family protein; prot... 50 1e-05
ref|NP_149387.1| heme maturase [Tetrahymena thermophila] gi|1501... 33 3.0
>dbj|BAB32997.1| putative zinc-finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 357
Score = 58.2 bits (139), Expect = 7e-08
Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 4/49 (8%)
Frame = -2
Query: 535 DCLGRVPDSSLSVPQIPSPPTASGLHWPKNPQY----SSDSGLFVPDIS 401
D G+VP+ +VP++PSPPTASGLHW ++P+Y + S +FVPDIS
Sbjct: 284 DFFGQVPEVHWAVPELPSPPTASGLHWQRDPRYGGGATDASAVFVPDIS 332
>pir||JE0116 zinc-finger protein R2931 [imported] - rice
gi|3618316|dbj|BAA33204.1| zinc finger protein [Oryza
sativa (japonica cultivar-group)]
Length = 360
Score = 56.2 bits (134), Expect = 2e-07
Identities = 29/56 (51%), Positives = 41/56 (72%), Gaps = 3/56 (5%)
Frame = -2
Query: 529 LGRVPDSSLSVPQIPSPPTASGLHWPKN---PQYSSDSGLFVPDISFSSMQRPQSS 371
LG+VPD+ +VP++PSPPTASGL+W N P Y DS +FVP+I SS++ Q++
Sbjct: 295 LGQVPDNPWTVPEVPSPPTASGLYWQNNLLCPSY--DSTMFVPEI--SSLENSQNN 346
>sp|Q9SYM2|COL7_ARATH Zinc finger protein constans-like 7 gi|25406558|pir||F96814
hypothetical protein T30F21.7 [imported] - Arabidopsis
thaliana gi|4836873|gb|AAD30576.1|AC007260_7 Highly
similar to rice zinc finger protein [Arabidopsis
thaliana]
Length = 327
Score = 50.4 bits (119), Expect = 1e-05
Identities = 26/51 (50%), Positives = 39/51 (75%)
Frame = -2
Query: 544 EDDDCLGRVPDSSLSVPQIPSPPTASGLHWPKNPQYSSDSGLFVPDISFSS 392
++++CLG ++S +VPQI SPPTASGL+WPK+ + S +FVPDI+ S+
Sbjct: 264 DNNNCLGG--ETSWAVPQIQSPPTASGLNWPKHFHHHS---VFVPDITSST 309
>ref|NP_565183.1| CONSTANS B-box zinc finger family protein; protein id: At1g78600.1,
supported by cDNA: 34830., supported by cDNA:
gi_20260417 [Arabidopsis thaliana]
gi|20260418|gb|AAM13107.1| highly similar to rice zinc
finger protein [Arabidopsis thaliana]
gi|21592988|gb|AAM64937.1| zinc finger protein, putative
[Arabidopsis thaliana]
Length = 299
Score = 50.4 bits (119), Expect = 1e-05
Identities = 26/51 (50%), Positives = 39/51 (75%)
Frame = -2
Query: 544 EDDDCLGRVPDSSLSVPQIPSPPTASGLHWPKNPQYSSDSGLFVPDISFSS 392
++++CLG ++S +VPQI SPPTASGL+WPK+ + S +FVPDI+ S+
Sbjct: 236 DNNNCLGG--ETSWAVPQIQSPPTASGLNWPKHFHHHS---VFVPDITSST 281
>ref|NP_149387.1| heme maturase [Tetrahymena thermophila]
gi|15011489|gb|AAK77584.1|AF396436_24 heme maturase
[Tetrahymena thermophila]
Length = 518
Score = 32.7 bits (73), Expect = 3.0
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Frame = -1
Query: 248 EFHHGCLCFFLGVNF*LHLLGVKGF-------------PIKFGPAALLLHF*NPLQMLHL 108
++ + CLCFFL F L ++ K F I F + L + + L +
Sbjct: 262 QYVYYCLCFFLYFYFFLKIINTKKFYKFKYYNFIKLTSNIVFYIIIINLFYNFKVNTLQI 321
Query: 107 FIYQYLVQYV*VVLVVCFFTIL 42
FIY Y+ ++ +VL F+ IL
Sbjct: 322 FIYSYINTFILLVLCSIFYIIL 343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,700,713
Number of Sequences: 1393205
Number of extensions: 9559055
Number of successful extensions: 19914
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19902
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
