Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002209A_C01 KMC002209A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194708.1| putative protein; protein id: At4g29790.1, supp... 57 1e-07
pir||T01287 hypothetical protein At2g19390 [imported] - Arabidop... 38 0.055
ref|NP_565452.1| expressed protein; protein id: At2g19390.1, sup... 38 0.055
gb|AAL24106.1| unknown protein [Arabidopsis thaliana] 37 0.12
gb|AAO33767.1| putative drought-induced protein [Oryza sativa (i... 35 0.36
>ref|NP_194708.1| putative protein; protein id: At4g29790.1, supported by cDNA:
gi_15810172 [Arabidopsis thaliana] gi|7486229|pir||T08540
hypothetical protein F27B13.30 - Arabidopsis thaliana
gi|4914403|emb|CAB43654.1| putative protein [Arabidopsis
thaliana] gi|7269878|emb|CAB79737.1| putative protein
[Arabidopsis thaliana] gi|15810173|gb|AAL06988.1|
AT4g29790/F27B13_30 [Arabidopsis thaliana]
gi|27363444|gb|AAO11641.1| At4g29790/F27B13_30
[Arabidopsis thaliana]
Length = 1211
Score = 57.0 bits (136), Expect = 1e-07
Identities = 28/42 (66%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 493 DVLDGQGQDFGSWLNIDDDGLHD-NDCMGLEIPMDDLSDLNM 371
D D Q D SWLNIDDD L D +D +GL+IPMDDLSDLNM
Sbjct: 1168 DDFDTQAGDLSSWLNIDDDALPDTDDLLGLQIPMDDLSDLNM 1209
>pir||T01287 hypothetical protein At2g19390 [imported] - Arabidopsis thaliana
Length = 1203
Score = 38.1 bits (87), Expect = 0.055
Identities = 19/40 (47%), Positives = 24/40 (59%)
Frame = -3
Query: 484 DGQGQDFGSWLNIDDDGLHDNDCMGLEIPMDDLSDLNMTL 365
D Q D SW N+DD+ D D L IP DD+S+LN+ L
Sbjct: 1166 DAQPGDINSWFNMDDE--EDFDMTELGIPTDDISELNIKL 1203
>ref|NP_565452.1| expressed protein; protein id: At2g19390.1, supported by cDNA:
gi_16604626 [Arabidopsis thaliana]
gi|20197016|gb|AAC16469.2| expressed protein [Arabidopsis
thaliana]
Length = 1211
Score = 38.1 bits (87), Expect = 0.055
Identities = 19/40 (47%), Positives = 24/40 (59%)
Frame = -3
Query: 484 DGQGQDFGSWLNIDDDGLHDNDCMGLEIPMDDLSDLNMTL 365
D Q D SW N+DD+ D D L IP DD+S+LN+ L
Sbjct: 1174 DAQPGDINSWFNMDDE--EDFDMTELGIPTDDISELNIKL 1211
>gb|AAL24106.1| unknown protein [Arabidopsis thaliana]
Length = 1211
Score = 37.0 bits (84), Expect = 0.12
Identities = 19/40 (47%), Positives = 24/40 (59%)
Frame = -3
Query: 484 DGQGQDFGSWLNIDDDGLHDNDCMGLEIPMDDLSDLNMTL 365
D Q D SW N+DD+ D D L IP DD+S+LN+ L
Sbjct: 1174 DVQPGDINSWFNMDDE--EDFDMTELGIPTDDISELNIKL 1211
>gb|AAO33767.1| putative drought-induced protein [Oryza sativa (indica
cultivar-group)]
Length = 465
Score = 35.4 bits (80), Expect = 0.36
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 487 LDGQGQDFGSWLNIDDDGLHDNDCMG-LEIPMDDLSDL 377
L QG D SWL D D D D G LEIP+DD+++L
Sbjct: 425 LGEQGNDISSWLTDDLDVPQDFDLSGALEIPLDDIAEL 462
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,796,574
Number of Sequences: 1393205
Number of extensions: 7537383
Number of successful extensions: 17421
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17399
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
