Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002208A_C05 KMC002208A_c05
(874 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK62450.1|AF387005_1 Unknown protein [Arabidopsis thaliana] 237 1e-61
ref|NP_564806.1| expressed protein; protein id: At1g63000.1, sup... 237 1e-61
gb|AAC32137.1| hypothetical protein [Picea mariana] 234 6e-61
gb|AAM65668.1| unknown [Arabidopsis thaliana] 235 6e-61
ref|NP_177978.1| dTDP-glucose 4,6-dehydratase, putative; protein... 228 1e-58
>gb|AAK62450.1|AF387005_1 Unknown protein [Arabidopsis thaliana]
Length = 301
Score = 237 bits (605), Expect = 1e-61
Identities = 115/126 (91%), Positives = 124/126 (98%)
Frame = -2
Query: 870 GSFYSKTKAMVEDLLRNYDNVCTLRVRMPISSDLSNPRNFITKISRYEKVVDIPNSMTIL 691
GSFYSKTKAMVE+LL+NY+NVCTLRVRMPISSDL+NPRNFITKI+RYEKVVDIPNSMTIL
Sbjct: 141 GSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLTNPRNFITKIARYEKVVDIPNSMTIL 200
Query: 690 DELLPISIEMAKRNLTGIWNFTNPGVVSHNEILAMYKEYIDSNFTWKNFTLEEQAKVIVA 511
DELLPISIEMAKRNLTGI+NFTNPGVVSHNEIL MY++YID +FTWKNFTLEEQAKVIVA
Sbjct: 201 DELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVA 260
Query: 510 PRSNNE 493
PRSNNE
Sbjct: 261 PRSNNE 266
>ref|NP_564806.1| expressed protein; protein id: At1g63000.1, supported by cDNA:
41505., supported by cDNA: gi_12083297, supported by
cDNA: gi_14423535 [Arabidopsis thaliana]
gi|25404387|pir||B96655 hypothetical protein F16P17.17
[imported] - Arabidopsis thaliana
gi|8493590|gb|AAF75813.1|AC011000_16 Contains weak
similarity to 5-epimerase from Saccharopolyspora
erythraea gb|L37354. ESTs gb|T41773, gb|R29767,
gb|T88368, gb|F13963 come from this gene. [Arabidopsis
thaliana] gi|12083298|gb|AAG48808.1|AF332445_1 unknown
protein [Arabidopsis thaliana]
Length = 301
Score = 237 bits (605), Expect = 1e-61
Identities = 115/126 (91%), Positives = 124/126 (98%)
Frame = -2
Query: 870 GSFYSKTKAMVEDLLRNYDNVCTLRVRMPISSDLSNPRNFITKISRYEKVVDIPNSMTIL 691
GSFYSKTKAMVE+LL+NY+NVCTLRVRMPISSDL+NPRNFITKI+RYEKVVDIPNSMTIL
Sbjct: 141 GSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLTNPRNFITKIARYEKVVDIPNSMTIL 200
Query: 690 DELLPISIEMAKRNLTGIWNFTNPGVVSHNEILAMYKEYIDSNFTWKNFTLEEQAKVIVA 511
DELLPISIEMAKRNLTGI+NFTNPGVVSHNEIL MY++YID +FTWKNFTLEEQAKVIVA
Sbjct: 201 DELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVA 260
Query: 510 PRSNNE 493
PRSNNE
Sbjct: 261 PRSNNE 266
>gb|AAC32137.1| hypothetical protein [Picea mariana]
Length = 271
Score = 234 bits (596), Expect(2) = 6e-61
Identities = 112/127 (88%), Positives = 124/127 (97%)
Frame = -2
Query: 873 IGSFYSKTKAMVEDLLRNYDNVCTLRVRMPISSDLSNPRNFITKISRYEKVVDIPNSMTI 694
+GS+YSKTKAMVEDLL+N++NVCTLRVRMPISSDLSNPRNFITKISRY+KVV+IPNSMTI
Sbjct: 111 MGSYYSKTKAMVEDLLKNFENVCTLRVRMPISSDLSNPRNFITKISRYDKVVNIPNSMTI 170
Query: 693 LDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILAMYKEYIDSNFTWKNFTLEEQAKVIV 514
LDELLPISIEMAKRNLTGIWNFTNPGVVSHNEIL MY++YID ++TW+NFTLEEQAKVIV
Sbjct: 171 LDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRDYIDPSYTWRNFTLEEQAKVIV 230
Query: 513 APRSNNE 493
A RSNNE
Sbjct: 231 AARSNNE 237
Score = 23.5 bits (49), Expect(2) = 6e-61
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 478 KLSKELS*NCCPLRSHSLKYVFKPN 404
KL KE P++ +KYVF+PN
Sbjct: 242 KLKKEFP-ELLPIKESLVKYVFEPN 265
>gb|AAM65668.1| unknown [Arabidopsis thaliana]
Length = 300
Score = 235 bits (600), Expect = 6e-61
Identities = 114/126 (90%), Positives = 123/126 (97%)
Frame = -2
Query: 870 GSFYSKTKAMVEDLLRNYDNVCTLRVRMPISSDLSNPRNFITKISRYEKVVDIPNSMTIL 691
GSFYSKTKAMVE+LL+NY+NVCT RVRMPISSDL+NPRNFITKI+RYEKVVDIPNSMTIL
Sbjct: 140 GSFYSKTKAMVEELLKNYENVCTXRVRMPISSDLTNPRNFITKIARYEKVVDIPNSMTIL 199
Query: 690 DELLPISIEMAKRNLTGIWNFTNPGVVSHNEILAMYKEYIDSNFTWKNFTLEEQAKVIVA 511
DELLPISIEMAKRNLTGI+NFTNPGVVSHNEIL MY++YID +FTWKNFTLEEQAKVIVA
Sbjct: 200 DELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVA 259
Query: 510 PRSNNE 493
PRSNNE
Sbjct: 260 PRSNNE 265
>ref|NP_177978.1| dTDP-glucose 4,6-dehydratase, putative; protein id: At1g78570.1,
supported by cDNA: gi_14596090, supported by cDNA:
gi_20148284 [Arabidopsis thaliana]
gi|25406555|pir||C96814 hypothetical protein T30F21.10
[imported] - Arabidopsis thaliana
gi|4836876|gb|AAD30579.1|AC007260_10 Similar to
dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana]
gi|14596091|gb|AAK68773.1| Similar to dTDP-D-glucose
4,6-dehydratase [Arabidopsis thaliana]
gi|20148285|gb|AAM10033.1| similar to dTDP-D-glucose
4,6-dehydratase [Arabidopsis thaliana]
Length = 669
Score = 228 bits (580), Expect = 1e-58
Identities = 110/126 (87%), Positives = 118/126 (93%)
Frame = -2
Query: 870 GSFYSKTKAMVEDLLRNYDNVCTLRVRMPISSDLSNPRNFITKISRYEKVVDIPNSMTIL 691
GSFYSKTKAMVE+LL+ YDNVCTLRVRMPISSDL+NPRNFITKISRY KVV+IPNSMT+L
Sbjct: 513 GSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVL 572
Query: 690 DELLPISIEMAKRNLTGIWNFTNPGVVSHNEILAMYKEYIDSNFTWKNFTLEEQAKVIVA 511
DELLPISIEMAKRNL GIWNFTNPGVVSHNEIL MY++YI+ F W NFTLEEQAKVIVA
Sbjct: 573 DELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVA 632
Query: 510 PRSNNE 493
PRSNNE
Sbjct: 633 PRSNNE 638
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 763,782,623
Number of Sequences: 1393205
Number of extensions: 17312603
Number of successful extensions: 41232
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 39548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41212
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46824663816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
