Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002206A_C01 KMC002206A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG00575.1|AF288041_1 splicing factor arginine/serine rich 2 ... 69 2e-11
dbj|BAC36925.1| unnamed protein product [Mus musculus] 66 2e-10
ref|NP_065612.1| splicing factor, arginine/serine-rich 4 (SRp75)... 66 2e-10
gb|AAH26944.1| Similar to splicing factor, arginine/serine-rich ... 66 2e-10
sp|Q8VE97|SFR4_MOUSE Splicing factor, arginine/serine-rich 4 gi|... 66 2e-10
>gb|AAG00575.1|AF288041_1 splicing factor arginine/serine rich 2 [Oryzias latipes]
Length = 211
Score = 69.3 bits (168), Expect = 2e-11
Identities = 49/80 (61%), Positives = 55/80 (68%), Gaps = 10/80 (12%)
Frame = -3
Query: 504 YRHRSRSNSRSPPRRYR---RSRSPSRSRS-SRRHYSSSRSGSPSPSRTHSRSRSRSRSR 337
Y RSRS S SP RR R RSRS SRSRS SRRHYS SRS S S SR+ SRSRSRS+S+
Sbjct: 102 YGRRSRSRSGSPRRRRRSRSRSRSRSRSRSRSRRHYSRSRSRSDSRSRSRSRSRSRSKSK 161
Query: 336 S-----PYSRSP-RKRNRSR 295
S S+SP R R+RS+
Sbjct: 162 SRTPKRSKSKSPSRSRSRSK 181
Score = 62.8 bits (151), Expect = 2e-09
Identities = 42/86 (48%), Positives = 51/86 (58%), Gaps = 14/86 (16%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRY---RRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRS 340
SR R RSRS SRS RR+ RSRS SRSRS R S S+S S +P R+ S+S SRSRS
Sbjct: 119 SRSRSRSRSRSRSRSRRHYSRSRSRSDSRSRSRSRSRSRSKSKSRTPKRSKSKSPSRSRS 178
Query: 339 RS-----------PYSRSPRKRNRSR 295
RS P+ R + R+RS+
Sbjct: 179 RSKSKSKAKSPTPPFKRESKSRSRSK 204
Score = 52.8 bits (125), Expect = 2e-06
Identities = 31/60 (51%), Positives = 41/60 (67%), Gaps = 1/60 (1%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPS-RTHSRSRSRSRSRS 334
SR R RSRS S+S R +RS+S S SRS R S S++ SP+P + S+SRSRS+S+S
Sbjct: 148 SRSRSRSRSRSKSKSRTPKRSKSKSPSRSRSRSKSKSKAKSPTPPFKRESKSRSRSKSKS 207
Score = 46.6 bits (109), Expect = 2e-04
Identities = 36/74 (48%), Positives = 38/74 (50%), Gaps = 13/74 (17%)
Frame = -3
Query: 477 RSPPRRYRRSRSPSRSRSSRRHY---SSSRSGSP-----SPSRTHSRSRSRSRSRSPYSR 322
R P Y R P R Y S SRSGSP S SR+ SRSRSRSRSR YSR
Sbjct: 80 RPPDSMYSRRGPPPRRYGGGGGYGRRSRSRSGSPRRRRRSRSRSRSRSRSRSRSRRHYSR 139
Query: 321 S-----PRKRNRSR 295
S R R+RSR
Sbjct: 140 SRSRSDSRSRSRSR 153
>dbj|BAC36925.1| unnamed protein product [Mus musculus]
Length = 491
Score = 66.2 bits (160), Expect = 2e-10
Identities = 40/72 (55%), Positives = 46/72 (63%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSP 331
SR R SRS SRS R RSRS S S + S SRSGS S S++ SRS+SRSRS+
Sbjct: 186 SRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKE 245
Query: 330 YSRSPRKRNRSR 295
SRSP K N+SR
Sbjct: 246 KSRSPSKDNKSR 257
Score = 55.8 bits (133), Expect = 3e-07
Identities = 32/57 (56%), Positives = 36/57 (63%)
Frame = -3
Query: 465 RRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
R Y RSRS SRSRS RH SRS S S +HS+SRSRSRS S R R++SR
Sbjct: 183 RSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSR 239
Score = 52.4 bits (124), Expect = 3e-06
Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYR--RSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPY 328
RH S+S SRS RR R RS SR+RS + S +S S SR+ S+ SRSRSRS
Sbjct: 294 RHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSKVGSRSRSRSKD 353
Query: 327 SRSPRKRNR 301
R RKR+R
Sbjct: 354 KRKGRKRSR 362
Score = 48.1 bits (113), Expect = 6e-05
Identities = 32/56 (57%), Positives = 36/56 (64%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRS 334
R RSRS S+S P SRS S+S S R S S+S S S SR+ SRSRSRS SRS
Sbjct: 438 RARSRSTSKSKPNVPAESRSRSKSASKTR--SRSKSPSRSASRSPSRSRSRSHSRS 491
Score = 47.8 bits (112), Expect = 8e-05
Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTH---SRS-----R 355
SR RH +S SRS + S+S SRSRS S SRS S S SR+ SRS +
Sbjct: 196 SRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNK 255
Query: 354 SRSRSRSP-YSRSPRK 310
SRSRSRSP SRS K
Sbjct: 256 SRSRSRSPDKSRSKSK 271
Score = 45.1 bits (105), Expect = 5e-04
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 19/91 (20%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYR----------RSRSPSRSRSSRRHY---------SSSRSGS 388
S+ R RS+S SRS + R RSRSP +SRS + + S+ ++ S
Sbjct: 230 SKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKS 289
Query: 387 PSPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
SPSR S+SRSRS+ R R +R+R
Sbjct: 290 HSPSRHDSKSRSRSQERRAEEERRRSVSRAR 320
Score = 44.7 bits (104), Expect = 6e-04
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -3
Query: 495 RSRSNSRSP-PRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRS 319
R+ S +P P RSRS S+S+ + S SRS S S +R+ S+S SRS SRSP
Sbjct: 425 RAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSR 484
Query: 318 PRKRNRS 298
R +RS
Sbjct: 485 SRSHSRS 491
Score = 44.7 bits (104), Expect = 6e-04
Identities = 27/69 (39%), Positives = 36/69 (52%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSR 322
R RS+ SRS + +SRS SRS+ R S S+ R+ SRSRSRS+S SR
Sbjct: 318 RARSQEKSRSQEKSLLKSRSRSRSKVGSRSRSRSKDKRKGRKRSRDESRSRSRSKSERSR 377
Query: 321 SPRKRNRSR 295
+ S+
Sbjct: 378 KHSSKRDSK 386
Score = 43.9 bits (102), Expect = 0.001
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRS--------SRRHYSSSRSGSPSPSRTHSR-- 361
S + RSRS S S R RSRS SRSRS S+ + S SRS SP SR+ S+
Sbjct: 214 SHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKDH 273
Query: 360 ---------SRSRSRSRSPYSRSPRKRNRSR 295
S +++S SP + R+RS+
Sbjct: 274 AEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQ 304
Score = 42.0 bits (97), Expect = 0.004
Identities = 30/70 (42%), Positives = 36/70 (50%)
Frame = -3
Query: 507 RYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPY 328
R R SR+ S+ R +S SRSRS + S SRS S + RSR SRSRS
Sbjct: 312 RRRSVSRARSQEKSRSQEKSLLKSRSRSRSKVGSRSRSRSKDKRKGRKRSRDESRSRS-R 370
Query: 327 SRSPRKRNRS 298
S+S R R S
Sbjct: 371 SKSERSRKHS 380
Score = 41.2 bits (95), Expect = 0.007
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -3
Query: 501 RHRSRSNSRSP-PRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYS 325
+ SR+ S P R+RS S S+S + SRS S S S+T SRS+S SRS S
Sbjct: 421 QRESRAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSP 480
Query: 324 RSPRKRNRSR 295
R R+ SR
Sbjct: 481 SRSRSRSHSR 490
Score = 40.4 bits (93), Expect = 0.012
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = -3
Query: 456 RRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
R+ R SRR S SRS S S SR+ SR +SRSRS S+S ++RSR
Sbjct: 168 RKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSR 221
Score = 40.4 bits (93), Expect = 0.012
Identities = 26/67 (38%), Positives = 37/67 (54%), Gaps = 2/67 (2%)
Frame = -3
Query: 489 RSNSRSPPRRYRRSRSPSRSRSSR--RHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSP 316
++ S SP R +SRS S+ R + R S SR+ S SR+ +S +SRSRS
Sbjct: 286 KAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSKVGS 345
Query: 315 RKRNRSR 295
R R+RS+
Sbjct: 346 RSRSRSK 352
Score = 38.9 bits (89), Expect = 0.035
Identities = 23/72 (31%), Positives = 34/72 (46%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSP 331
SR R RS+ + R SRS SRS+S R SS+ S S + + + SRSP
Sbjct: 345 SRSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSP 404
Query: 330 YSRSPRKRNRSR 295
++R ++
Sbjct: 405 SRSVSKEREHAK 416
Score = 38.5 bits (88), Expect = 0.046
Identities = 24/67 (35%), Positives = 36/67 (52%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSP 331
S+ RSRS S+ + +RSR SRSRS + S + S S+ S S S+ + +
Sbjct: 341 SKVGSRSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKV-SSSSSKKKKDTD 399
Query: 330 YSRSPRK 310
+SRSP +
Sbjct: 400 HSRSPSR 406
Score = 36.2 bits (82), Expect = 0.23
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 33/103 (32%)
Frame = -3
Query: 507 RYRHRSRSNSRSPPRRYRR----------------------SRSPSRSRSSRRHYSSSRS 394
R R SRS SRS R R+ SRSPSRS S R ++ + S
Sbjct: 360 RSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPSRSVSKEREHAKAES 419
Query: 393 G-----------SPSPSRTHSRSRSRSRSRSPYSRSPRKRNRS 298
G +P+P +RSRS S+S+ R R++S
Sbjct: 420 GQRESRAEGESEAPNPE-PRARSRSTSKSKPNVPAESRSRSKS 461
Score = 36.2 bits (82), Expect = 0.23
Identities = 31/74 (41%), Positives = 37/74 (49%), Gaps = 2/74 (2%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSP--SRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSR 337
+R + +SRS +S + RSRS SRSR SRS R SR SRSRSR
Sbjct: 319 ARSQEKSRSQEKSLLKSRSRSRSKVGSRSR--------SRSKDKRKGRKRSRDESRSRSR 370
Query: 336 SPYSRSPRKRNRSR 295
S RS RK + R
Sbjct: 371 SKSERS-RKHSSKR 383
Score = 36.2 bits (82), Expect = 0.23
Identities = 25/68 (36%), Positives = 32/68 (46%)
Frame = -3
Query: 495 RSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSP 316
+SRS SRS RSRS + + +R SRS S S S SR S R S S
Sbjct: 334 KSRSRSRSKVGSRSRSRSKDKRKGRKRSRDESRSRSRSKSE-RSRKHSSKRDSKVSSSSS 392
Query: 315 RKRNRSRH 292
+K+ + H
Sbjct: 393 KKKKDTDH 400
Score = 35.4 bits (80), Expect = 0.39
Identities = 27/83 (32%), Positives = 36/83 (42%), Gaps = 12/83 (14%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSP 331
SR RSRS S+S R S+ S+ SS S SPSR+ S+ R +++ S
Sbjct: 361 SRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPSRSVSKEREHAKAESG 420
Query: 330 YSRS------------PRKRNRS 298
S PR R+RS
Sbjct: 421 QRESRAEGESEAPNPEPRARSRS 443
Score = 33.9 bits (76), Expect = 1.1
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 23/89 (25%)
Frame = -3
Query: 498 HRSRSNSRSPPRRYRRSRS-------------PSRSRSSRRHYSSSRSGSP--------- 385
++SRS SRSP + +S+ ++S S RH S SRS S
Sbjct: 254 NKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQERRAEEERR 313
Query: 384 -SPSRTHSRSRSRSRSRSPYSRSPRKRNR 301
S SR S+ +SRS+ +S R R++
Sbjct: 314 RSVSRARSQEKSRSQEKSLLKSRSRSRSK 342
Score = 33.5 bits (75), Expect = 1.5
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 56/127 (44%)
Frame = -3
Query: 507 RYRHRS--RSNSRSPPRRYRR----------------------SRSPSRSRSSRRHYSSS 400
R R R RS SRS R R+ SRSPSRS S R ++ +
Sbjct: 358 RKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPSRSVSKEREHAKA 417
Query: 399 RSG-----------SPSP---------------------SRTHSRSRSRSRSRSPYSRSP 316
SG +P+P SR+ S S++RSRS+SP +
Sbjct: 418 ESGQRESRAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSAS 477
Query: 315 RKRNRSR 295
R +RSR
Sbjct: 478 RSPSRSR 484
>ref|NP_065612.1| splicing factor, arginine/serine-rich 4 (SRp75); similar to
splicing factor, arginine/serine-rich 4 (SFRS4) [Mus
musculus] gi|7670438|dbj|BAA95070.1| unnamed protein
product [Mus musculus]
Length = 339
Score = 66.2 bits (160), Expect = 2e-10
Identities = 40/72 (55%), Positives = 46/72 (63%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSP 331
SR R SRS SRS R RSRS S S + S SRSGS S S++ SRS+SRSRS+
Sbjct: 34 SRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKE 93
Query: 330 YSRSPRKRNRSR 295
SRSP K N+SR
Sbjct: 94 KSRSPSKDNKSR 105
Score = 55.8 bits (133), Expect = 3e-07
Identities = 32/57 (56%), Positives = 36/57 (63%)
Frame = -3
Query: 465 RRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
R Y RSRS SRSRS RH SRS S S +HS+SRSRSRS S R R++SR
Sbjct: 31 RSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSR 87
Score = 52.4 bits (124), Expect = 3e-06
Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYR--RSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPY 328
RH S+S SRS RR R RS SR+RS + S +S S SR+ S+ SRSRSRS
Sbjct: 142 RHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSKVGSRSRSRSKD 201
Query: 327 SRSPRKRNR 301
R RKR+R
Sbjct: 202 KRKGRKRSR 210
Score = 48.1 bits (113), Expect = 6e-05
Identities = 32/56 (57%), Positives = 36/56 (64%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRS 334
R RSRS S+S P SRS S+S S R S S+S S S SR+ SRSRSRS SRS
Sbjct: 286 RARSRSTSKSKPNVPAESRSRSKSASKTR--SRSKSPSRSASRSPSRSRSRSHSRS 339
Score = 47.8 bits (112), Expect = 8e-05
Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTH---SRS-----R 355
SR RH +S SRS + S+S SRSRS S SRS S S SR+ SRS +
Sbjct: 44 SRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNK 103
Query: 354 SRSRSRSP-YSRSPRK 310
SRSRSRSP SRS K
Sbjct: 104 SRSRSRSPDKSRSKSK 119
Score = 45.1 bits (105), Expect = 5e-04
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 19/91 (20%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYR----------RSRSPSRSRSSRRHY---------SSSRSGS 388
S+ R RS+S SRS + R RSRSP +SRS + + S+ ++ S
Sbjct: 78 SKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKS 137
Query: 387 PSPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
SPSR S+SRSRS+ R R +R+R
Sbjct: 138 HSPSRHDSKSRSRSQERRAEEERRRSVSRAR 168
Score = 44.7 bits (104), Expect = 6e-04
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -3
Query: 495 RSRSNSRSP-PRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRS 319
R+ S +P P RSRS S+S+ + S SRS S S +R+ S+S SRS SRSP
Sbjct: 273 RAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSR 332
Query: 318 PRKRNRS 298
R +RS
Sbjct: 333 SRSHSRS 339
Score = 44.7 bits (104), Expect = 6e-04
Identities = 27/69 (39%), Positives = 36/69 (52%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSR 322
R RS+ SRS + +SRS SRS+ R S S+ R+ SRSRSRS+S SR
Sbjct: 166 RARSQEKSRSQEKSLLKSRSRSRSKVGSRSRSRSKDKRKGRKRSRDESRSRSRSKSERSR 225
Query: 321 SPRKRNRSR 295
+ S+
Sbjct: 226 KHSSKRDSK 234
Score = 43.9 bits (102), Expect = 0.001
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRS--------SRRHYSSSRSGSPSPSRTHSR-- 361
S + RSRS S S R RSRS SRSRS S+ + S SRS SP SR+ S+
Sbjct: 62 SHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKDH 121
Query: 360 ---------SRSRSRSRSPYSRSPRKRNRSR 295
S +++S SP + R+RS+
Sbjct: 122 AEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQ 152
Score = 42.0 bits (97), Expect = 0.004
Identities = 30/70 (42%), Positives = 36/70 (50%)
Frame = -3
Query: 507 RYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPY 328
R R SR+ S+ R +S SRSRS + S SRS S + RSR SRSRS
Sbjct: 160 RRRSVSRARSQEKSRSQEKSLLKSRSRSRSKVGSRSRSRSKDKRKGRKRSRDESRSRS-R 218
Query: 327 SRSPRKRNRS 298
S+S R R S
Sbjct: 219 SKSERSRKHS 228
Score = 41.2 bits (95), Expect = 0.007
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -3
Query: 501 RHRSRSNSRSP-PRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYS 325
+ SR+ S P R+RS S S+S + SRS S S S+T SRS+S SRS S
Sbjct: 269 QRESRAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSP 328
Query: 324 RSPRKRNRSR 295
R R+ SR
Sbjct: 329 SRSRSRSHSR 338
Score = 40.4 bits (93), Expect = 0.012
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = -3
Query: 456 RRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
R+ R SRR S SRS S S SR+ SR +SRSRS S+S ++RSR
Sbjct: 16 RKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSR 69
Score = 40.4 bits (93), Expect = 0.012
Identities = 26/67 (38%), Positives = 37/67 (54%), Gaps = 2/67 (2%)
Frame = -3
Query: 489 RSNSRSPPRRYRRSRSPSRSRSSR--RHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSP 316
++ S SP R +SRS S+ R + R S SR+ S SR+ +S +SRSRS
Sbjct: 134 KAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSKVGS 193
Query: 315 RKRNRSR 295
R R+RS+
Sbjct: 194 RSRSRSK 200
Score = 38.9 bits (89), Expect = 0.035
Identities = 23/72 (31%), Positives = 34/72 (46%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSP 331
SR R RS+ + R SRS SRS+S R SS+ S S + + + SRSP
Sbjct: 193 SRSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSP 252
Query: 330 YSRSPRKRNRSR 295
++R ++
Sbjct: 253 SRSVSKEREHAK 264
Score = 38.5 bits (88), Expect = 0.046
Identities = 24/67 (35%), Positives = 36/67 (52%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSP 331
S+ RSRS S+ + +RSR SRSRS + S + S S+ S S S+ + +
Sbjct: 189 SKVGSRSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKV-SSSSSKKKKDTD 247
Query: 330 YSRSPRK 310
+SRSP +
Sbjct: 248 HSRSPSR 254
Score = 36.2 bits (82), Expect = 0.23
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 33/103 (32%)
Frame = -3
Query: 507 RYRHRSRSNSRSPPRRYRR----------------------SRSPSRSRSSRRHYSSSRS 394
R R SRS SRS R R+ SRSPSRS S R ++ + S
Sbjct: 208 RSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPSRSVSKEREHAKAES 267
Query: 393 G-----------SPSPSRTHSRSRSRSRSRSPYSRSPRKRNRS 298
G +P+P +RSRS S+S+ R R++S
Sbjct: 268 GQRESRAEGESEAPNPE-PRARSRSTSKSKPNVPAESRSRSKS 309
Score = 36.2 bits (82), Expect = 0.23
Identities = 31/74 (41%), Positives = 37/74 (49%), Gaps = 2/74 (2%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSP--SRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSR 337
+R + +SRS +S + RSRS SRSR SRS R SR SRSRSR
Sbjct: 167 ARSQEKSRSQEKSLLKSRSRSRSKVGSRSR--------SRSKDKRKGRKRSRDESRSRSR 218
Query: 336 SPYSRSPRKRNRSR 295
S RS RK + R
Sbjct: 219 SKSERS-RKHSSKR 231
Score = 36.2 bits (82), Expect = 0.23
Identities = 25/68 (36%), Positives = 32/68 (46%)
Frame = -3
Query: 495 RSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSP 316
+SRS SRS RSRS + + +R SRS S S S SR S R S S
Sbjct: 182 KSRSRSRSKVGSRSRSRSKDKRKGRKRSRDESRSRSRSKSE-RSRKHSSKRDSKVSSSSS 240
Query: 315 RKRNRSRH 292
+K+ + H
Sbjct: 241 KKKKDTDH 248
Score = 35.4 bits (80), Expect = 0.39
Identities = 27/83 (32%), Positives = 36/83 (42%), Gaps = 12/83 (14%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSP 331
SR RSRS S+S R S+ S+ SS S SPSR+ S+ R +++ S
Sbjct: 209 SRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPSRSVSKEREHAKAESG 268
Query: 330 YSRS------------PRKRNRS 298
S PR R+RS
Sbjct: 269 QRESRAEGESEAPNPEPRARSRS 291
Score = 33.9 bits (76), Expect = 1.1
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 23/89 (25%)
Frame = -3
Query: 498 HRSRSNSRSPPRRYRRSRS-------------PSRSRSSRRHYSSSRSGSP--------- 385
++SRS SRSP + +S+ ++S S RH S SRS S
Sbjct: 102 NKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQERRAEEERR 161
Query: 384 -SPSRTHSRSRSRSRSRSPYSRSPRKRNR 301
S SR S+ +SRS+ +S R R++
Sbjct: 162 RSVSRARSQEKSRSQEKSLLKSRSRSRSK 190
Score = 33.5 bits (75), Expect = 1.5
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 56/127 (44%)
Frame = -3
Query: 507 RYRHRS--RSNSRSPPRRYRR----------------------SRSPSRSRSSRRHYSSS 400
R R R RS SRS R R+ SRSPSRS S R ++ +
Sbjct: 206 RKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKDTDHSRSPSRSVSKEREHAKA 265
Query: 399 RSG-----------SPSP---------------------SRTHSRSRSRSRSRSPYSRSP 316
SG +P+P SR+ S S++RSRS+SP +
Sbjct: 266 ESGQRESRAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSAS 325
Query: 315 RKRNRSR 295
R +RSR
Sbjct: 326 RSPSRSR 332
>gb|AAH26944.1| Similar to splicing factor, arginine/serine-rich 4 (SRp75) [Mus
musculus]
Length = 489
Score = 66.2 bits (160), Expect = 2e-10
Identities = 40/72 (55%), Positives = 46/72 (63%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSP 331
SR R SRS SRS R RSRS S S + S SRSGS S S++ SRS+SRSRS+
Sbjct: 186 SRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKE 245
Query: 330 YSRSPRKRNRSR 295
SRSP K N+SR
Sbjct: 246 KSRSPSKDNKSR 257
Score = 55.8 bits (133), Expect = 3e-07
Identities = 32/57 (56%), Positives = 36/57 (63%)
Frame = -3
Query: 465 RRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
R Y RSRS SRSRS RH SRS S S +HS+SRSRSRS S R R++SR
Sbjct: 183 RSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSR 239
Score = 50.4 bits (119), Expect = 1e-05
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYR--RSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPY 328
RH S+S SRS RR R RS SR+RS + S +S S SR+ SRSRSRS+ +
Sbjct: 294 RHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSRSRSKDKRKG 353
Query: 327 SRSPRKRNRSR 295
+ R +RSR
Sbjct: 354 RKRSRDESRSR 364
Score = 48.1 bits (113), Expect = 6e-05
Identities = 32/56 (57%), Positives = 36/56 (64%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRS 334
R RSRS S+S P SRS S+S S R S S+S S S SR+ SRSRSRS SRS
Sbjct: 436 RARSRSTSKSKPNVPAESRSRSKSASKTR--SRSKSPSRSASRSPSRSRSRSHSRS 489
Score = 47.8 bits (112), Expect = 8e-05
Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTH---SRS-----R 355
SR RH +S SRS + S+S SRSRS S SRS S S SR+ SRS +
Sbjct: 196 SRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNK 255
Query: 354 SRSRSRSP-YSRSPRK 310
SRSRSRSP SRS K
Sbjct: 256 SRSRSRSPDKSRSKSK 271
Score = 45.4 bits (106), Expect = 4e-04
Identities = 32/73 (43%), Positives = 38/73 (51%), Gaps = 10/73 (13%)
Frame = -3
Query: 489 RSNSRSPPRRYRRSRSPS----------RSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRS 340
++ S SP R +SRS S RS S R SRS S ++ SRSRSRSRS
Sbjct: 286 KAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSRS 345
Query: 339 RSPYSRSPRKRNR 301
RS R RKR+R
Sbjct: 346 RSKDKRKGRKRSR 358
Score = 44.7 bits (104), Expect = 6e-04
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -3
Query: 495 RSRSNSRSP-PRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRS 319
R+ S +P P RSRS S+S+ + S SRS S S +R+ S+S SRS SRSP
Sbjct: 423 RAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSR 482
Query: 318 PRKRNRS 298
R +RS
Sbjct: 483 SRSHSRS 489
Score = 43.9 bits (102), Expect = 0.001
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRS--------SRRHYSSSRSGSPSPSRTHSR-- 361
S + RSRS S S R RSRS SRSRS S+ + S SRS SP SR+ S+
Sbjct: 214 SHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKDH 273
Query: 360 ---------SRSRSRSRSPYSRSPRKRNRSR 295
S +++S SP + R+RS+
Sbjct: 274 AEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQ 304
Score = 43.9 bits (102), Expect = 0.001
Identities = 30/69 (43%), Positives = 36/69 (51%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSR 322
R RS S +RS + + +S +SRS R S SRS R SR SRSRSRS R
Sbjct: 312 RRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSRSRSKDKRKGRKRSRDESRSRSRSKSER 371
Query: 321 SPRKRNRSR 295
S RK + R
Sbjct: 372 S-RKHSSKR 379
Score = 43.1 bits (100), Expect = 0.002
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRY--------RRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSR 355
SR R RSRS SRS +R RSRS S+S SR+H S S S S + + +
Sbjct: 335 SRSRSRSRSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSSSKKKK 394
Query: 354 SRSRSRSPYSRSPRKRNRSR 295
SRSP ++R ++
Sbjct: 395 DTDHSRSPSRSVSKEREHAK 414
Score = 42.7 bits (99), Expect = 0.002
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 15/86 (17%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYR----------RSRSPSRSRSSRRHYSSSR---SGSPSPSRT 370
S+ R RS+S SRS + R RSRSP +SRS + ++ + + S +++
Sbjct: 230 SKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKS 289
Query: 369 HSRSRS--RSRSRSPYSRSPRKRNRS 298
HS SR +SRSRS R+ +R RS
Sbjct: 290 HSPSRHDSKSRSRSQERRAEEERRRS 315
Score = 40.8 bits (94), Expect = 0.009
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -3
Query: 492 SRSNSRSP-PRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSP 316
SR+ S P R+RS S S+S + SRS S S S+T SRS+S SRS S
Sbjct: 422 SRAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRS 481
Query: 315 RKRNRSR 295
R R+ SR
Sbjct: 482 RSRSHSR 488
Score = 40.4 bits (93), Expect = 0.012
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = -3
Query: 456 RRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
R+ R SRR S SRS S S SR+ SR +SRSRS S+S ++RSR
Sbjct: 168 RKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSR 221
Score = 38.9 bits (89), Expect = 0.035
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYR-------------RSRSPSRSRSSRRHYSSSRSGSPSPSRT 370
SR R RS SRS + + +S SPSR S R S R R+
Sbjct: 256 SRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQERRAEEERRRS 315
Query: 369 HSRSRSRSRSRSPYSRSPRKRNRSR 295
SR+RS+ +SRS + R+RSR
Sbjct: 316 VSRARSQEKSRSQEKSLLKSRSRSR 340
Score = 38.5 bits (88), Expect = 0.046
Identities = 30/91 (32%), Positives = 42/91 (45%), Gaps = 23/91 (25%)
Frame = -3
Query: 498 HRSRSNSRSPPRRYRRSRS-------------PSRSRSSRRHYSSSRSGSP--------- 385
++SRS SRSP + +S+ ++S S RH S SRS S
Sbjct: 254 NKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQERRAEEERR 313
Query: 384 -SPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
S SR S+ +SRS+ +S R R+RSR
Sbjct: 314 RSVSRARSQEKSRSQEKSLLKSRSRSRSRSR 344
Score = 36.6 bits (83), Expect = 0.18
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPS-RTHSRSRSRSRSRS 334
SR + +S SRS R RSRS + + +R SRS S S S R+ S R S
Sbjct: 325 SRSQEKSLLKSRSRSRSRSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVS 384
Query: 333 PYSRSPRKRNRSRH 292
S S +K+ + H
Sbjct: 385 SSSSSSKKKKDTDH 398
Score = 35.4 bits (80), Expect = 0.39
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 35/105 (33%)
Frame = -3
Query: 507 RYRHRSRSNSRSPPRRYRR------------------------SRSPSRSRSSRRHYSSS 400
R R SRS SRS R R+ SRSPSRS S R ++ +
Sbjct: 356 RSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSSSKKKKDTDHSRSPSRSVSKEREHAKA 415
Query: 399 RSG-----------SPSPSRTHSRSRSRSRSRSPYSRSPRKRNRS 298
SG +P+P +RSRS S+S+ R R++S
Sbjct: 416 ESGQRGSRAEGESEAPNPE-PRARSRSTSKSKPNVPAESRSRSKS 459
>sp|Q8VE97|SFR4_MOUSE Splicing factor, arginine/serine-rich 4 gi|18043896|gb|AAH19437.1|
Unknown (protein for MGC:30385) [Mus musculus]
Length = 489
Score = 66.2 bits (160), Expect = 2e-10
Identities = 40/72 (55%), Positives = 46/72 (63%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSP 331
SR R SRS SRS R RSRS S S + S SRSGS S S++ SRS+SRSRS+
Sbjct: 186 SRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKE 245
Query: 330 YSRSPRKRNRSR 295
SRSP K N+SR
Sbjct: 246 KSRSPSKDNKSR 257
Score = 55.8 bits (133), Expect = 3e-07
Identities = 32/57 (56%), Positives = 36/57 (63%)
Frame = -3
Query: 465 RRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
R Y RSRS SRSRS RH SRS S S +HS+SRSRSRS S R R++SR
Sbjct: 183 RSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSR 239
Score = 50.4 bits (119), Expect = 1e-05
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYR--RSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPY 328
RH S+S SRS RR R RS SR+RS + S +S S SR+ SRSRSRS+ +
Sbjct: 294 RHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSRSRSKDKRKG 353
Query: 327 SRSPRKRNRSR 295
+ R +RSR
Sbjct: 354 RKRSRDESRSR 364
Score = 48.1 bits (113), Expect = 6e-05
Identities = 32/56 (57%), Positives = 36/56 (64%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRS 334
R RSRS S+S P SRS S+S S R S S+S S S SR+ SRSRSRS SRS
Sbjct: 436 RARSRSTSKSKPNVPAESRSRSKSASKTR--SRSKSPSRSASRSPSRSRSRSHSRS 489
Score = 47.8 bits (112), Expect = 8e-05
Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTH---SRS-----R 355
SR RH +S SRS + S+S SRSRS S SRS S S SR+ SRS +
Sbjct: 196 SRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNK 255
Query: 354 SRSRSRSP-YSRSPRK 310
SRSRSRSP SRS K
Sbjct: 256 SRSRSRSPDKSRSKSK 271
Score = 45.4 bits (106), Expect = 4e-04
Identities = 32/73 (43%), Positives = 38/73 (51%), Gaps = 10/73 (13%)
Frame = -3
Query: 489 RSNSRSPPRRYRRSRSPS----------RSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRS 340
++ S SP R +SRS S RS S R SRS S ++ SRSRSRSRS
Sbjct: 286 KAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSRS 345
Query: 339 RSPYSRSPRKRNR 301
RS R RKR+R
Sbjct: 346 RSKDKRKGRKRSR 358
Score = 44.7 bits (104), Expect = 6e-04
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -3
Query: 495 RSRSNSRSP-PRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRS 319
R+ S +P P RSRS S+S+ + S SRS S S +R+ S+S SRS SRSP
Sbjct: 423 RAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSR 482
Query: 318 PRKRNRS 298
R +RS
Sbjct: 483 SRSHSRS 489
Score = 43.9 bits (102), Expect = 0.001
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRS--------SRRHYSSSRSGSPSPSRTHSR-- 361
S + RSRS S S R RSRS SRSRS S+ + S SRS SP SR+ S+
Sbjct: 214 SHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKDH 273
Query: 360 ---------SRSRSRSRSPYSRSPRKRNRSR 295
S +++S SP + R+RS+
Sbjct: 274 AEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQ 304
Score = 43.9 bits (102), Expect = 0.001
Identities = 30/69 (43%), Positives = 36/69 (51%)
Frame = -3
Query: 501 RHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSR 322
R RS S +RS + + +S +SRS R S SRS R SR SRSRSRS R
Sbjct: 312 RRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSRSRSKDKRKGRKRSRDESRSRSRSKSER 371
Query: 321 SPRKRNRSR 295
S RK + R
Sbjct: 372 S-RKHSSKR 379
Score = 43.1 bits (100), Expect = 0.002
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRY--------RRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSR 355
SR R RSRS SRS +R RSRS S+S SR+H S S S S + + +
Sbjct: 335 SRSRSRSRSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSSSKKKK 394
Query: 354 SRSRSRSPYSRSPRKRNRSR 295
SRSP ++R ++
Sbjct: 395 DTDHSRSPSRSVSKEREHAK 414
Score = 42.7 bits (99), Expect = 0.002
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 15/86 (17%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYR----------RSRSPSRSRSSRRHYSSSR---SGSPSPSRT 370
S+ R RS+S SRS + R RSRSP +SRS + ++ + + S +++
Sbjct: 230 SKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKS 289
Query: 369 HSRSRS--RSRSRSPYSRSPRKRNRS 298
HS SR +SRSRS R+ +R RS
Sbjct: 290 HSPSRHDSKSRSRSQERRAEEERRRS 315
Score = 40.8 bits (94), Expect = 0.009
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -3
Query: 492 SRSNSRSP-PRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSP 316
SR+ S P R+RS S S+S + SRS S S S+T SRS+S SRS S
Sbjct: 422 SRAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRS 481
Query: 315 RKRNRSR 295
R R+ SR
Sbjct: 482 RSRSHSR 488
Score = 40.4 bits (93), Expect = 0.012
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = -3
Query: 456 RRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
R+ R SRR S SRS S S SR+ SR +SRSRS S+S ++RSR
Sbjct: 168 RKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSR 221
Score = 38.9 bits (89), Expect = 0.035
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYR-------------RSRSPSRSRSSRRHYSSSRSGSPSPSRT 370
SR R RS SRS + + +S SPSR S R S R R+
Sbjct: 256 SRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQERRAEEERRRS 315
Query: 369 HSRSRSRSRSRSPYSRSPRKRNRSR 295
SR+RS+ +SRS + R+RSR
Sbjct: 316 VSRARSQEKSRSQEKSLLKSRSRSR 340
Score = 38.5 bits (88), Expect = 0.046
Identities = 30/91 (32%), Positives = 42/91 (45%), Gaps = 23/91 (25%)
Frame = -3
Query: 498 HRSRSNSRSPPRRYRRSRS-------------PSRSRSSRRHYSSSRSGSP--------- 385
++SRS SRSP + +S+ ++S S RH S SRS S
Sbjct: 254 NKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQERRAEEERR 313
Query: 384 -SPSRTHSRSRSRSRSRSPYSRSPRKRNRSR 295
S SR S+ +SRS+ +S R R+RSR
Sbjct: 314 RSVSRARSQEKSRSQEKSLLKSRSRSRSRSR 344
Score = 36.6 bits (83), Expect = 0.18
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 510 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPS-RTHSRSRSRSRSRS 334
SR + +S SRS R RSRS + + +R SRS S S S R+ S R S
Sbjct: 325 SRSQEKSLLKSRSRSRSRSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVS 384
Query: 333 PYSRSPRKRNRSRH 292
S S +K+ + H
Sbjct: 385 SSSSSSKKKKDTDH 398
Score = 35.4 bits (80), Expect = 0.39
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 35/105 (33%)
Frame = -3
Query: 507 RYRHRSRSNSRSPPRRYRR------------------------SRSPSRSRSSRRHYSSS 400
R R SRS SRS R R+ SRSPSRS S R ++ +
Sbjct: 356 RSRDESRSRSRSKSERSRKHSSKRDSKVSSSSSSSKKKKDTDHSRSPSRSVSKEREHAKA 415
Query: 399 RSG-----------SPSPSRTHSRSRSRSRSRSPYSRSPRKRNRS 298
SG +P+P +RSRS S+S+ R R++S
Sbjct: 416 ESGQRGSRAEGESEAPNPE-PRARSRSTSKSKPNVPAESRSRSKS 459
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,090,847
Number of Sequences: 1393205
Number of extensions: 11824755
Number of successful extensions: 111989
Number of sequences better than 10.0: 2222
Number of HSP's better than 10.0 without gapping: 54671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86687
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
