Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002205A_C01 KMC002205A_c01
(773 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201429.1| GDP-D-mannose 4,6-dehydratase; GMD1 (gb|AAF0719... 206 3e-52
pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-Mannose 4,6-Deh... 204 1e-51
gb|AAM61140.1| GDP-D-mannose-4,6-dehydratase MUR1 [Arabidopsis t... 202 3e-51
gb|AAB51505.1| GDP-D-mannose-4,6-dehydratase [Arabidopsis thaliana] 202 3e-51
ref|NP_190685.1| GDP-D-mannose-4,6-dehydratase (MUR1); protein i... 202 3e-51
>ref|NP_201429.1| GDP-D-mannose 4,6-dehydratase; GMD1 (gb|AAF07199.1); protein id:
At5g66280.1, supported by cDNA: gi_6319185 [Arabidopsis
thaliana] gi|9087168|sp|Q9SNY3|GMD1_ARATH GDP-mannose
4,6 dehydratase (GDP-D-mannose dehydratase) (GMD)
gi|6319186|gb|AAF07199.1|AF195140_1 GDP-D-mannose
4,6-dehydratase; GMD1 [Arabidopsis thaliana]
gi|10177422|dbj|BAB10707.1| GDP-D-mannose
4,6-dehydratase; GMD1 [Arabidopsis thaliana]
Length = 361
Score = 206 bits (524), Expect = 3e-52
Identities = 96/116 (82%), Positives = 108/116 (92%)
Frame = -1
Query: 773 AGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEVAFGSAGLNWKDHVVIDKRYFRPSE 594
AGDYVEAMWLMLQQEKPDDYVVATEESHTV+EFL+V+FG GLNWKDHV IDKRYFRP+E
Sbjct: 246 AGDYVEAMWLMLQQEKPDDYVVATEESHTVKEFLDVSFGYVGLNWKDHVEIDKRYFRPTE 305
Query: 593 VDNLQGDASKAKKILGWKPKVGFSQLVKMMVDHDIEMAKKEKVLVDAGYIDAQPPP 426
VDNL+GDASKAK++LGWKPKVGF +LVKMMVD D+E+AK+EKVL DAGY+DAQ P
Sbjct: 306 VDNLKGDASKAKEMLGWKPKVGFEKLVKMMVDEDLELAKREKVLADAGYMDAQQQP 361
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-Mannose 4,6-Dehydratase
Ternary Complex With Nadph And Gdp-Rhamnose.
gi|28373939|pdb|1N7G|B Chain B, Crystal Structure Of The
Gdp-Mannose 4,6-Dehydratase Ternary Complex With Nadph
And Gdp-Rhamnose. gi|28373940|pdb|1N7G|C Chain C,
Crystal Structure Of The Gdp-Mannose 4,6-Dehydratase
Ternary Complex With Nadph And Gdp-Rhamnose.
gi|28373941|pdb|1N7G|D Chain D, Crystal Structure Of The
Gdp-Mannose 4,6-Dehydratase Ternary Complex With Nadph
And Gdp-Rhamnose. gi|28373942|pdb|1N7H|A Chain A,
Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp gi|28373943|pdb|1N7H|B Chain
B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase
Ternary Complex With Nadph And Gdp
Length = 381
Score = 204 bits (519), Expect = 1e-51
Identities = 95/117 (81%), Positives = 109/117 (92%)
Frame = -1
Query: 773 AGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEVAFGSAGLNWKDHVVIDKRYFRPSE 594
AGDYVEAMWLMLQQEKPDDYVVATEE HTVEEFL+V+FG GLNWKD+V ID+RYFRP+E
Sbjct: 258 AGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAE 317
Query: 593 VDNLQGDASKAKKILGWKPKVGFSQLVKMMVDHDIEMAKKEKVLVDAGYIDAQPPPL 423
VDNLQGDASKAK++LGWKP+VGF +LVKMMVD D+E+AK+EKVLVDAGY+DA+ PL
Sbjct: 318 VDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAKQQPL 374
>gb|AAM61140.1| GDP-D-mannose-4,6-dehydratase MUR1 [Arabidopsis thaliana]
Length = 373
Score = 202 bits (515), Expect = 3e-51
Identities = 94/116 (81%), Positives = 108/116 (93%)
Frame = -1
Query: 773 AGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEVAFGSAGLNWKDHVVIDKRYFRPSE 594
AGDYVEAMWLMLQQEKPDDYVVATEE HTVEEFL+V+FG GLNWKD+V ID+RYFRP+E
Sbjct: 258 AGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAE 317
Query: 593 VDNLQGDASKAKKILGWKPKVGFSQLVKMMVDHDIEMAKKEKVLVDAGYIDAQPPP 426
VDNLQGDASKAK++LGWKP+VGF +LVKMMVD D+E+AK+EKVLVDAGY+DA+ P
Sbjct: 318 VDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAKQQP 373
>gb|AAB51505.1| GDP-D-mannose-4,6-dehydratase [Arabidopsis thaliana]
Length = 373
Score = 202 bits (515), Expect = 3e-51
Identities = 94/116 (81%), Positives = 108/116 (93%)
Frame = -1
Query: 773 AGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEVAFGSAGLNWKDHVVIDKRYFRPSE 594
AGDYVEAMWLMLQQEKPDDYVVATEE HTVEEFL+V+FG GLNWKD+V ID+RYFRP+E
Sbjct: 258 AGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAE 317
Query: 593 VDNLQGDASKAKKILGWKPKVGFSQLVKMMVDHDIEMAKKEKVLVDAGYIDAQPPP 426
VDNLQGDASKAK++LGWKP+VGF +LVKMMVD D+E+AK+EKVLVDAGY+DA+ P
Sbjct: 318 VDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAKQQP 373
>ref|NP_190685.1| GDP-D-mannose-4,6-dehydratase (MUR1); protein id: At3g51160.1,
supported by cDNA: 11217., supported by cDNA: gi_1764099
[Arabidopsis thaliana] gi|11279570|pir||T45747
GDP-D-mannose-4,6-dehydratase (MUR1) - Arabidopsis
thaliana gi|6562268|emb|CAB62638.1| GDP-D-mannose-4,
6-dehydratase (MUR1) [Arabidopsis thaliana]
Length = 373
Score = 202 bits (515), Expect = 3e-51
Identities = 94/116 (81%), Positives = 108/116 (93%)
Frame = -1
Query: 773 AGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEVAFGSAGLNWKDHVVIDKRYFRPSE 594
AGDYVEAMWLMLQQEKPDDYVVATEE HTVEEFL+V+FG GLNWKD+V ID+RYFRP+E
Sbjct: 258 AGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAE 317
Query: 593 VDNLQGDASKAKKILGWKPKVGFSQLVKMMVDHDIEMAKKEKVLVDAGYIDAQPPP 426
VDNLQGDASKAK++LGWKP+VGF +LVKMMVD D+E+AK+EKVLVDAGY+DA+ P
Sbjct: 318 VDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYMDAKQQP 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 696,679,985
Number of Sequences: 1393205
Number of extensions: 16083342
Number of successful extensions: 120479
Number of sequences better than 10.0: 1069
Number of HSP's better than 10.0 without gapping: 68804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98972
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
