Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002200A_C01 KMC002200A_c01
(715 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA14492.1| agCP8084 [Anopheles gambiae str. PEST] 37 0.21
ref|NP_258386.1| unknown [Spodoptera litura nucleopolyhedrovirus... 34 2.3
ref|XP_207550.1| similar to Retrovirus-related POL polyprotein [... 33 3.0
gb|AAG45120.1|AF310889_1 unknown [Dictyostelium discoideum] 33 3.0
ref|NP_659567.1| transient receptor potential cation channel, su... 32 6.7
>gb|EAA14492.1| agCP8084 [Anopheles gambiae str. PEST]
Length = 299
Score = 37.4 bits (85), Expect = 0.21
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = -3
Query: 275 YNERCSLDIHYRECEMRDADDTTTCTSSMSPNVLFSPLSSYSYFYMKLYLC*NVDTY 105
Y ER + R E DD ++CT S+SP VL LSS S +K Y+C +VD Y
Sbjct: 36 YYER---QVGLRAAESHGVDDGSSCTKSVSPRVL--SLSSSSPNVIKTYVCSSVDHY 87
>ref|NP_258386.1| unknown [Spodoptera litura nucleopolyhedrovirus]
gi|15553322|gb|AAL01800.1|AF325155_112 unknown
[Spodoptera litura nucleopolyhedrovirus]
Length = 919
Score = 33.9 bits (76), Expect = 2.3
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 1/142 (0%)
Frame = -3
Query: 521 CVYSEDEYIEMEPGMMRFKSLNVHGFGDVSEPDEQDEDDFQCIMLYSSWNQYKKYMYFLF 342
CV ++ + E P ++ + NV G + + Q ++L ++ N Y Y +F
Sbjct: 36 CVQAKFKSAECRPDVVYKRVRNVADAGFDFRRVDHIKLYTQTLVLLNNLNYYSPYKTDVF 95
Query: 341 CGCLIELVFHHFFSATMPIMYVYNERCSLDIHYRECEM-RDADDTTTCTSSMSPNVLFSP 165
G + ++ + N SLD+ E+ R D+ S P+V
Sbjct: 96 IGMMASNC------RSLSYLVATNSTLSLDVQRESSELFRWTSDSLVRYHSFDPDVFLRT 149
Query: 164 LSSYSYFYMKLYLC*NVDTYLL 99
+ FY L N DTY+L
Sbjct: 150 FVDFQNFYNTFVLWNNHDTYIL 171
>ref|XP_207550.1| similar to Retrovirus-related POL polyprotein [Mus musculus]
Length = 213
Score = 33.5 bits (75), Expect = 3.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 207 CCVICISHFAFPVVYI*TASLIINIHYWHCC*KKVMKH 320
CC+IC+S +AF +YI + + + C K++ KH
Sbjct: 102 CCLICVSFYAFDTIYITKEVINLYNENFKCVKKEIKKH 139
>gb|AAG45120.1|AF310889_1 unknown [Dictyostelium discoideum]
Length = 1220
Score = 33.5 bits (75), Expect = 3.0
Identities = 27/110 (24%), Positives = 50/110 (44%), Gaps = 6/110 (5%)
Frame = -1
Query: 700 WGNSDKIDD------SISYQFLGGKIFGEGFEPEILKLIMREERPEDLDEKQSSCDRKFS 539
WGN D+++D + Y FL + E E+ K I + RP+ D ++ D+K S
Sbjct: 945 WGNDDQLNDHCVPMFQVIYPFLYSILCEEIGLDEVSKFISDQARPDSYDNQKPLNDQKKS 1004
Query: 538 EFGVHGVFILKMSILKWNLA*CVLSL*MCMVLVMYQNLMSKMRMIFNVSC 389
H F L ++ NL+ + + + + N++ ++ +VSC
Sbjct: 1005 ----HNPFTLAGQLITANLSLVNIQM-HVLESTQFLNIIQELVNCSSVSC 1049
>ref|NP_659567.1| transient receptor potential cation channel, subfamily V, member 3;
TRP ion channel TRPV3 [Mus musculus]
gi|20908451|gb|AAM33069.1|AF510316_1 TRP ion channel
TRPV3 [Mus musculus]
Length = 791
Score = 32.3 bits (72), Expect = 6.7
Identities = 15/49 (30%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Frame = -3
Query: 392 MLYSSWNQYKKYMYFL-FCGCLIELVFHHFFSATMPIMYVYNERCSLDI 249
+L++ W ++ KYM+FL FC F+ F++ T+ ++ Y R D+
Sbjct: 428 LLHTKWKKFAKYMFFLSFC-------FYFFYNITLTLVSYYRPREDEDL 469
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 617,031,687
Number of Sequences: 1393205
Number of extensions: 13805495
Number of successful extensions: 35417
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 33763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35366
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
