Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002197A_C01 KMC002197A_c01
(427 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA65612.1| histidine kinase [Dictyostelium discoideum] 32 2.4
pir||S71628 sensory transduction histidine kinase dokA - slime m... 32 2.4
gb|AAO52477.1| similar to Dictyostelium discoideum (Slime mold).... 32 2.4
ref|NP_055612.1| KIAA0441 gene product [Homo sapiens] gi|6686086... 30 5.3
gb|AAO50775.1| similar to Dictyostelium discoideum (Slime mold).... 30 5.3
>emb|CAA65612.1| histidine kinase [Dictyostelium discoideum]
Length = 1670
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 207 ASSNSNNNHQ*CAQSHSLSI*SKMHTPXSSLFRSFFCTTCGNTLVSSTSQLTDSKLSPLN 386
+SSNSNNN + S+ S + +T SS C N SSTS S S +
Sbjct: 630 SSSNSNNNSNNASSSNCSSNANSNNTNSSSSNCCCCCNNNNNNNTSSTSSTISSASSTKS 689
Query: 387 QSYV 398
+SY+
Sbjct: 690 KSYL 693
>pir||S71628 sensory transduction histidine kinase dokA - slime mold
(Dictyostelium discoideum)
Length = 1671
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 207 ASSNSNNNHQ*CAQSHSLSI*SKMHTPXSSLFRSFFCTTCGNTLVSSTSQLTDSKLSPLN 386
+SSNSNNN + S+ S + +T SS C N SSTS S S +
Sbjct: 631 SSSNSNNNSNNASSSNCSSNANSNNTNSSSSNCCCCCNNNNNNNTSSTSSTISSASSTKS 690
Query: 387 QSYV 398
+SY+
Sbjct: 691 KSYL 694
>gb|AAO52477.1| similar to Dictyostelium discoideum (Slime mold). Histidine kinase
Length = 1671
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 207 ASSNSNNNHQ*CAQSHSLSI*SKMHTPXSSLFRSFFCTTCGNTLVSSTSQLTDSKLSPLN 386
+SSNSNNN + S+ S + +T SS C N SSTS S S +
Sbjct: 631 SSSNSNNNSNNASSSNCSSNANSNNTNSSSSNCCCCCNNNNNNNTSSTSSTISSASSTKS 690
Query: 387 QSYV 398
+SY+
Sbjct: 691 KSYL 694
>ref|NP_055612.1| KIAA0441 gene product [Homo sapiens]
gi|6686086|sp|O43167|Y441_HUMAN Hypothetical zinc finger
protein KIAA0441 gi|2662163|dbj|BAA23713.1| Start codon
is not identified [Homo sapiens]
Length = 697
Score = 30.4 bits (67), Expect = 5.3
Identities = 17/51 (33%), Positives = 24/51 (46%)
Frame = +3
Query: 243 AQSHSLSI*SKMHTPXSSLFRSFFCTTCGNTLVSSTSQLTDSKLSPLNQSY 395
AQ HSL + ++MHT R + CT C L + S L L +S+
Sbjct: 332 AQKHSLQVHTRMHTGE----RPYTCTVCSKALTTKHSLLEHMSLHSGQKSF 378
>gb|AAO50775.1| similar to Dictyostelium discoideum (Slime mold). Nucleotide exchange
factor RasGEF P
Length = 2454
Score = 30.4 bits (67), Expect = 5.3
Identities = 20/67 (29%), Positives = 36/67 (52%), Gaps = 4/67 (5%)
Frame = +3
Query: 210 SSNSNNNHQ*CAQSHSLSI*SKMHTPXSSLFRSFFCTTCG----NTLVSSTSQLTDSKLS 377
++N+NNN+ S ++ + ++TP SS S TT G +T SST+ T+S +
Sbjct: 986 NNNNNNNNNSNNSGSSGNLANNLNTPTSSQTNSSSTTTAGTNPTSTSTSSTTTGTNSTTT 1045
Query: 378 PLNQSYV 398
N++ +
Sbjct: 1046 TTNENEI 1052
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,891,857
Number of Sequences: 1393205
Number of extensions: 6385606
Number of successful extensions: 14485
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14476
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
