Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002195A_C01 KMC002195A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42247.1| unknown protein [Arabidopsis thaliana] 59 3e-14
ref|NP_180909.1| hypothetical protein; protein id: At2g33510.1 [... 59 3e-14
ref|NP_174128.1| hypothetical protein; protein id: At1g28070.1 [... 60 1e-13
pir||T31613 hypothetical protein Y50E8A.i - Caenorhabditis elegans 41 0.007
ref|NP_704368.1| hypothetical protein [Plasmodium falciparum 3D7... 39 0.026
>gb|AAO42247.1| unknown protein [Arabidopsis thaliana]
Length = 189
Score = 58.5 bits (140), Expect(2) = 3e-14
Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Frame = -2
Query: 467 EEESRYDSEESSSESCTSSSKEHYAPLSCVEKQ-----NVLVVAGCKSCLMYFMVPK 312
E+ S YDSEESSSES SS + H E++ +VLVVAGCK+C MYFMVPK
Sbjct: 110 EDSSYYDSEESSSESSPSSRENHKEEEEEEEEEEEEEEDVLVVAGCKACFMYFMVPK 166
Score = 40.8 bits (94), Expect(2) = 3e-14
Identities = 16/24 (66%), Positives = 18/24 (74%)
Frame = -3
Query: 316 PNTVEDCPKCSGQLLHFDRSENGS 245
P VEDCPKC+ QLLHFDR + S
Sbjct: 165 PKLVEDCPKCAAQLLHFDRPHSAS 188
>ref|NP_180909.1| hypothetical protein; protein id: At2g33510.1 [Arabidopsis
thaliana] gi|25408280|pir||D84746 hypothetical protein
At2g33510 [imported] - Arabidopsis thaliana
gi|2459433|gb|AAB80668.1| hypothetical protein
[Arabidopsis thaliana]
Length = 184
Score = 58.5 bits (140), Expect(2) = 3e-14
Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Frame = -2
Query: 467 EEESRYDSEESSSESCTSSSKEHYAPLSCVEKQ-----NVLVVAGCKSCLMYFMVPK 312
E+ S YDSEESSSES SS + H E++ +VLVVAGCK+C MYFMVPK
Sbjct: 105 EDSSYYDSEESSSESSPSSRENHKEEEEEEEEEEEEEEDVLVVAGCKACFMYFMVPK 161
Score = 40.8 bits (94), Expect(2) = 3e-14
Identities = 16/24 (66%), Positives = 18/24 (74%)
Frame = -3
Query: 316 PNTVEDCPKCSGQLLHFDRSENGS 245
P VEDCPKC+ QLLHFDR + S
Sbjct: 160 PKLVEDCPKCAAQLLHFDRPHSAS 183
>ref|NP_174128.1| hypothetical protein; protein id: At1g28070.1 [Arabidopsis
thaliana] gi|25511672|pir||D86406 19.9K hypothetical
protein F13K9.17 - Arabidopsis thaliana
gi|12323005|gb|AAG51495.1|AC069471_26 hypothetical
protein [Arabidopsis thaliana]
Length = 176
Score = 60.5 bits (145), Expect(2) = 1e-13
Identities = 34/56 (60%), Positives = 40/56 (70%), Gaps = 1/56 (1%)
Frame = -2
Query: 476 YESEE-ESRYDSEESSSESCTSSSKEHYAPLSCVEKQNVLVVAGCKSCLMYFMVPK 312
+ SEE S Y+SEESSSES SS K H + ++VLVVAGCK+CLMYFMVPK
Sbjct: 102 FSSEEVSSYYESEESSSESSPSSRKYHKEE----QDEDVLVVAGCKACLMYFMVPK 153
Score = 36.6 bits (83), Expect(2) = 1e-13
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 316 PNTVEDCPKCSGQLLHFDRSENGSP 242
P +DCPKC+ QLLHFD+ + SP
Sbjct: 152 PKLFKDCPKCATQLLHFDQLHSTSP 176
>pir||T31613 hypothetical protein Y50E8A.i - Caenorhabditis elegans
Length = 836
Score = 41.2 bits (95), Expect = 0.007
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -3
Query: 205 LFFPLFFFYFFNFLFYFFLSFIFAFACYPCGELIVLSFCLLLVYIFLCFCF 53
LF+ LFF Y F F F+F F+F F + + + F L ++IF+ F F
Sbjct: 738 LFYFLFFIYLFFFKFFFKFFFLFLFIFFIFMFIFIFIFILFFIFIFIYFYF 788
Score = 36.2 bits (82), Expect = 0.22
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 202 FFPLFFFYFFNFLFYFFL-SFIFAFACYPCGELIVLSFCLLLVYI-FLCFCFAQL 44
FF FF +FF FLF FF+ FIF F + +L F + +Y F+ F F L
Sbjct: 749 FFKFFFKFFFLFLFIFFIFMFIFIF-------IFILFFIFIFIYFYFILFFFIYL 796
Score = 33.9 bits (76), Expect = 1.1
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -3
Query: 199 FPLFFFYFFNFLFYFFLSFIFAFACYPCGELIVLSFCLLLVYIFLCFCF 53
F F + FNF FYFFL F F F Y F L ++IF F F
Sbjct: 722 FNFNFNFNFNFYFYFFL-FYFLFFIYLFFFKFFFKFFFLFLFIFFIFMF 769
Score = 31.6 bits (70), Expect = 5.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 202 FFPLFFFYFFNFLFYFFLSFIFAF 131
FF FF + F F FYF++ F F F
Sbjct: 798 FFKFFFLFIFIFYFYFYVYFYFNF 821
Score = 31.2 bits (69), Expect = 7.1
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 205 LFFPLFFFYFFNFLFYFFLSFIFAFACYPCGELIVLSFCLLLVYIFLCFCFAQLNV 38
LFF F YF+ LF+F F F F I + + VY + F F N+
Sbjct: 777 LFFIFIFIYFYFILFFFIYLFFFKFFFL----FIFIFYFYFYVYFYFNFNFFFFNL 828
Score = 30.8 bits (68), Expect = 9.3
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 202 FFPLFFF-YFFNFLFYFFLSFIFAFACYPCGELIVLSFCLLLVYIFLCF 59
+F LFFF Y F F F+F FIF F Y F L++I + F
Sbjct: 787 YFILFFFIYLFFFKFFFLFIFIFYFYFYVYFYFNFNFFFFNLLFIIIIF 835
>ref|NP_704368.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499107|emb|CAD51187.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1235
Score = 39.3 bits (90), Expect = 0.026
Identities = 20/65 (30%), Positives = 36/65 (54%), Gaps = 4/65 (6%)
Frame = -3
Query: 319 CPNTVEDCP-KCSGQLLHFDRSENGSP*LIASSLVSSSTLFFPLFFFYFFNFLF---YFF 152
C NT+E+ KC+ LH D++ G+ L+ ++L+ + PL + Y+ ++ Y F
Sbjct: 1165 CKNTIEEAILKCNKAKLHLDQAFGGNNELLQTALIKDALNALPLLYKYYIYIIYIYIYIF 1224
Query: 151 LSFIF 137
+ FIF
Sbjct: 1225 IYFIF 1229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,860,510
Number of Sequences: 1393205
Number of extensions: 9618149
Number of successful extensions: 61780
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 49236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58086
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
