Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002194A_C01 KMC002194A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL38830.2| unknown protein [Arabidopsis thaliana] 161 8e-39
emb|CAC85287.1| uroporphyrinogen III synthase [Arabidopsis thali... 161 8e-39
ref|NP_565625.1| expressed protein; protein id: At2g26540.1, sup... 161 8e-39
gb|AAM64811.1| uroporphyrinogen III synthase [Arabidopsis thaliana] 160 1e-38
pir||T00987 hypothetical protein At2g26540 [imported] - Arabidop... 127 9e-29
>gb|AAL38830.2| unknown protein [Arabidopsis thaliana]
Length = 193
Score = 161 bits (407), Expect = 8e-39
Identities = 76/110 (69%), Positives = 96/110 (87%), Gaps = 1/110 (0%)
Frame = -1
Query: 634 ASNEIEDGLSNRGFEVTRMNTYSTVPVQHVDLMVLKEALSAPVVTVASPSAIRAWKNLIS 455
A N+I +GLS RGFEV R+NTY+TVPVQ VD ++L++ALSAPV++VASPSA+RAW +LI
Sbjct: 74 AGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVRAWLHLIQ 133
Query: 454 DSE-WSNYVACIGETTAAKARGLGFRNVYYPTQPGLEGWVESVLEALGSY 308
+ E WSNYVACIGETTA+ AR LG +NVYYP +PGLEGWVES++EALG++
Sbjct: 134 NEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEGWVESIMEALGAH 183
>emb|CAC85287.1| uroporphyrinogen III synthase [Arabidopsis thaliana]
Length = 321
Score = 161 bits (407), Expect = 8e-39
Identities = 76/110 (69%), Positives = 96/110 (87%), Gaps = 1/110 (0%)
Frame = -1
Query: 634 ASNEIEDGLSNRGFEVTRMNTYSTVPVQHVDLMVLKEALSAPVVTVASPSAIRAWKNLIS 455
A N+I +GLS RGFEV R+NTY+TVPVQ VD ++L++ALSAPV++VASPSA+RAW +LI
Sbjct: 202 AGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVRAWLHLIQ 261
Query: 454 DSE-WSNYVACIGETTAAKARGLGFRNVYYPTQPGLEGWVESVLEALGSY 308
+ E WSNYVACIGETTA+ AR LG +NVYYP +PGLEGWVES++EALG++
Sbjct: 262 NEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEGWVESIMEALGAH 311
>ref|NP_565625.1| expressed protein; protein id: At2g26540.1, supported by cDNA:
33364. [Arabidopsis thaliana] gi|20196944|gb|AAC14502.2|
expressed protein [Arabidopsis thaliana]
Length = 321
Score = 161 bits (407), Expect = 8e-39
Identities = 76/110 (69%), Positives = 96/110 (87%), Gaps = 1/110 (0%)
Frame = -1
Query: 634 ASNEIEDGLSNRGFEVTRMNTYSTVPVQHVDLMVLKEALSAPVVTVASPSAIRAWKNLIS 455
A N+I +GLS RGFEV R+NTY+TVPVQ VD ++L++ALSAPV++VASPSA+RAW +LI
Sbjct: 202 AGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVRAWLHLIQ 261
Query: 454 DSE-WSNYVACIGETTAAKARGLGFRNVYYPTQPGLEGWVESVLEALGSY 308
+ E WSNYVACIGETTA+ AR LG +NVYYP +PGLEGWVES++EALG++
Sbjct: 262 NEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEGWVESIMEALGAH 311
>gb|AAM64811.1| uroporphyrinogen III synthase [Arabidopsis thaliana]
Length = 321
Score = 160 bits (406), Expect = 1e-38
Identities = 76/110 (69%), Positives = 96/110 (87%), Gaps = 1/110 (0%)
Frame = -1
Query: 634 ASNEIEDGLSNRGFEVTRMNTYSTVPVQHVDLMVLKEALSAPVVTVASPSAIRAWKNLIS 455
A N+I +GLS RGFEV R+NTY+TVPVQ VD ++L++ALSAPV++VASPSA+RAW +LI
Sbjct: 202 AGNDIVEGLSKRGFEVIRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVRAWLHLIQ 261
Query: 454 DSE-WSNYVACIGETTAAKARGLGFRNVYYPTQPGLEGWVESVLEALGSY 308
+ E WSNYVACIGETTA+ AR LG +NVYYP +PGLEGWVES++EALG++
Sbjct: 262 NEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEGWVESIMEALGAH 311
>pir||T00987 hypothetical protein At2g26540 [imported] - Arabidopsis thaliana
Length = 145
Score = 127 bits (320), Expect = 9e-29
Identities = 60/86 (69%), Positives = 76/86 (87%), Gaps = 1/86 (1%)
Frame = -1
Query: 562 VPVQHVDLMVLKEALSAPVVTVASPSAIRAWKNLISDSE-WSNYVACIGETTAAKARGLG 386
VPVQ VD ++L++ALSAPV++VASPSA+RAW +LI + E WSNYVACIGETTA+ AR LG
Sbjct: 50 VPVQSVDTVLLQQALSAPVLSVASPSAVRAWLHLIQNEEQWSNYVACIGETTASAARRLG 109
Query: 385 FRNVYYPTQPGLEGWVESVLEALGSY 308
+NVYYP +PGLEGWVES++EALG++
Sbjct: 110 LKNVYYPEKPGLEGWVESIMEALGAH 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,300,557
Number of Sequences: 1393205
Number of extensions: 10501934
Number of successful extensions: 24206
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24191
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
