Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002193A_C01 KMC002193A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00086491.1| hypothetical protein [Pseudomonas fluorescens... 35 0.44
gb|AAL66797.1| NADH dehydrogenase subunit 4 [Sinomicrurus japoni... 33 1.7
ref|NP_503838.1| Putative membrane protein family member, with a... 33 2.9
ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTE... 33 2.9
gb|AAF76343.1|AF271717_1 DspE [Pantoea agglomerans pv. gypsophilae] 32 3.8
>ref|ZP_00086491.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 564
Score = 35.4 bits (80), Expect = 0.44
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 239 FFSWEPLLLLLLPLFTLFFLPMFLAVFL-GCTMASWVLNFGAIPHV*PMV 385
F +W P L+L + L T++ L F A+F G +M +WV NF AIPH+ +V
Sbjct: 312 FKAWSPFLILTV-LVTIWTLKPFKAMFAAGGSMYAWVFNF-AIPHLDQLV 359
>gb|AAL66797.1| NADH dehydrogenase subunit 4 [Sinomicrurus japonicus]
Length = 231
Score = 33.5 bits (75), Expect = 1.7
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +2
Query: 164 TPPSSRYALEVSLMRTFRAFSEFSEFFSWEPLLLLLLPLFTLFFLPMFLAVFLGCTMASW 343
TPPS + E+ + S F+W P+ ++L L L L VFL M +
Sbjct: 146 TPPSMNFTSELLIA---------SSIFNWSPMTIILFGLLMLITASYSLHVFLSTQMGTT 196
Query: 344 VLNFGAIP 367
+LN P
Sbjct: 197 MLNIPTQP 204
>ref|NP_503838.1| Putative membrane protein family member, with at least 3
transmembrane domains, nematode specific [Caenorhabditis
elegans] gi|25353681|pir||E88986 protein C50H11.13
[imported] - Caenorhabditis elegans
gi|10864286|gb|AAG24000.1| Hypothetical protein
C50H11.13 [Caenorhabditis elegans]
Length = 371
Score = 32.7 bits (73), Expect = 2.9
Identities = 12/39 (30%), Positives = 24/39 (60%)
Frame = +2
Query: 242 FSWEPLLLLLLPLFTLFFLPMFLAVFLGCTMASWVLNFG 358
+S + ++++L T FFLP+ L +F ++ +W +FG
Sbjct: 190 YSSQTRIIIVLECLTTFFLPLILTIFADISVLTWKSSFG 228
>ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
gi|20984895|ref|XP_136007.1| similar to X INACTIVE
SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
Length = 172
Score = 32.7 bits (73), Expect = 2.9
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 257 LLLLLLPLFTLFFLPMFLAVFLGCTMASWVL 349
LL L LP F FLP F+ +FL C M++ +L
Sbjct: 26 LLHLFLPCFVCLFLPCFVCLFLPCIMSNSLL 56
>gb|AAF76343.1|AF271717_1 DspE [Pantoea agglomerans pv. gypsophilae]
Length = 1829
Score = 32.3 bits (72), Expect = 3.8
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -3
Query: 361 GAKIQNPRSHRASKENRQEHGQKEQCK*RKQQQKKRFPTKKL*KFTKSSKRPHQ 200
G + + +R N +++ + E K +QQKK F K L +F KS+K P Q
Sbjct: 41 GGLLTSEGKNRGKMPNIRQYFKGENKKDAARQQKKSFSLKNLFEFKKSAKPPEQ 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,980,772
Number of Sequences: 1393205
Number of extensions: 9925662
Number of successful extensions: 37276
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 35519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37149
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
