Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002189A_C05 KMC002189A_c05
(810 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P25159|STAU_DROME Maternal effect protein staufen gi|103244|p... 34 2.2
ref|NP_476751.1| staufen CG5753-PA gi|7302672|gb|AAF57752.1| CG5... 34 2.2
ref|NP_725748.1| staufen CG5753-PB gi|7302673|gb|AAF57753.1| CG5... 32 8.5
gb|EAA15380.1| suppressor of NosA [Plasmodium yoelii yoelii] 32 8.5
>sp|P25159|STAU_DROME Maternal effect protein staufen gi|103244|pir||A40315 maternal
effect protein (staufen) - fruit fly (Drosophila
melanogaster) gi|158506|gb|AAA73062.1| [D.melanogaster
mRNA, complete cds.], gene product
Length = 1026
Score = 34.3 bits (77), Expect = 2.2
Identities = 34/140 (24%), Positives = 56/140 (39%), Gaps = 1/140 (0%)
Frame = +1
Query: 241 NHDNHIPSHRKKKQSTLSQKQKHNVSFKLSLICNPKP*PAHR-LTP*SGKPVSHKIIFQS 417
N ++I S+ + Q Q Q ++S L+ N P P + P +G P +
Sbjct: 101 NSGSNISSNSNQMQKIRQQHQ--HLSSSNGLLGNQPPGPPPQAFNPLAGNPAALAYNQLP 158
Query: 418 VFQKLYMLLYILK*FNKPPLYYQHFQNNKPAKCFHHNQNFLNKIINNNS*SIHLRLPIAA 597
+M ++ PP YY KPAK H+ N + +NNS S + I
Sbjct: 159 PHPPHHMAAHLGSYAAPPPHYYM--SQAKPAKYNHYGSNANSNSGSNNSNSNYAPKAILQ 216
Query: 598 DNYNQMKISIEPPTKGGLPI 657
+ Y K+ + P + P+
Sbjct: 217 NTYRNQKVVVPPVVQEVTPV 236
>ref|NP_476751.1| staufen CG5753-PA gi|7302672|gb|AAF57752.1| CG5753-PA [Drosophila
melanogaster]
Length = 1026
Score = 34.3 bits (77), Expect = 2.2
Identities = 34/140 (24%), Positives = 56/140 (39%), Gaps = 1/140 (0%)
Frame = +1
Query: 241 NHDNHIPSHRKKKQSTLSQKQKHNVSFKLSLICNPKP*PAHR-LTP*SGKPVSHKIIFQS 417
N ++I S+ + Q Q Q ++S L+ N P P + P +G P +
Sbjct: 101 NSGSNISSNSNQMQKIRQQHQ--HLSSSNGLLGNQPPGPPPQAFNPLAGNPAALAYNQLP 158
Query: 418 VFQKLYMLLYILK*FNKPPLYYQHFQNNKPAKCFHHNQNFLNKIINNNS*SIHLRLPIAA 597
+M ++ PP YY KPAK H+ N + +NNS S + I
Sbjct: 159 PHPPHHMAAHLGSYAAPPPHYYM--SQAKPAKYNHYGSNANSNSGSNNSNSNYAPKAILQ 216
Query: 598 DNYNQMKISIEPPTKGGLPI 657
+ Y K+ + P + P+
Sbjct: 217 NTYRNQKVVVPPVVQEVTPV 236
>ref|NP_725748.1| staufen CG5753-PB gi|7302673|gb|AAF57753.1| CG5753-PB [Drosophila
melanogaster] gi|27819870|gb|AAO24983.1| LP08764p
[Drosophila melanogaster]
Length = 914
Score = 32.3 bits (72), Expect = 8.5
Identities = 29/122 (23%), Positives = 49/122 (39%), Gaps = 1/122 (0%)
Frame = +1
Query: 295 QKQKHNVSFKLSLICNPKP*PAHR-LTP*SGKPVSHKIIFQSVFQKLYMLLYILK*FNKP 471
++Q ++S L+ N P P + P +G P + +M ++ P
Sbjct: 5 RQQHQHLSSSNGLLGNQPPGPPPQAFNPLAGNPAALAYNQLPPHPPHHMAAHLGSYAAPP 64
Query: 472 PLYYQHFQNNKPAKCFHHNQNFLNKIINNNS*SIHLRLPIAADNYNQMKISIEPPTKGGL 651
P YY KPAK H+ N + +NNS S + I + Y K+ + P +
Sbjct: 65 PHYYM--SQAKPAKYNHYGSNANSNSGSNNSNSNYAPKAILQNTYRNQKVVVPPVVQEVT 122
Query: 652 PI 657
P+
Sbjct: 123 PV 124
>gb|EAA15380.1| suppressor of NosA [Plasmodium yoelii yoelii]
Length = 789
Score = 32.3 bits (72), Expect = 8.5
Identities = 30/117 (25%), Positives = 46/117 (38%), Gaps = 10/117 (8%)
Frame = +1
Query: 487 HFQNNKPAKCFHHNQNFLNKIINNNS*SIHLRL----------PIAADNYNQMKISIEPP 636
+FQNN+ F+HN N NK +NNN + ++ ++AD N+ +
Sbjct: 641 NFQNNRLNSLFNHNVNVSNKHVNNNDNNSVIKNVNINEEKKDGNLSADIQNREEQHNTDI 700
Query: 637 TKGGLPIRKLKDLNLTTIRYSVA*KSVDENKEWGKSQRLSEDLTTTMNRKGKHNRHE 807
L ++K KD +D N E +D T T N KH+ E
Sbjct: 701 INPELDLKKQKD------------DKIDLNNE-------GKDKTVTSNNLNKHDEQE 738
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 656,896,863
Number of Sequences: 1393205
Number of extensions: 13884604
Number of successful extensions: 28845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28792
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41456493416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
