Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002187A_C01 KMC002187A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173623.1| hypothetical protein; protein id: At1g22040.1 [... 162 3e-39
gb|AAM18732.1|AC092548_10 putative kelch-containing protein [Ory... 159 2e-38
gb|AAL84293.1|AC073556_10 putative Kelch motif containing protei... 86 4e-16
pir||F96594 unknown protein, 58496-60308 [imported] - Arabidopsi... 79 4e-14
ref|NP_564684.1| expressed protein; protein id: At1g55270.1, sup... 79 4e-14
>ref|NP_173623.1| hypothetical protein; protein id: At1g22040.1 [Arabidopsis
thaliana] gi|9280679|gb|AAF86548.1|AC069252_7 F2E2.11
[Arabidopsis thaliana]
Length = 475
Score = 162 bits (409), Expect = 3e-39
Identities = 85/166 (51%), Positives = 117/166 (70%), Gaps = 2/166 (1%)
Frame = +2
Query: 44 MGSFFSVPNTKSDTGDREGVSPNEACKRQRMSPTLYEESP-RLIPNLPDELSLQIIARLP 220
MGS S+ +K ++ +E+ KR+++S EE RLIP+LPDELS+QI+ARLP
Sbjct: 1 MGSVMSLSCSKRKATSQDVECSSESRKRRKISSENDEEECCRLIPSLPDELSIQILARLP 60
Query: 221 RICYLNVKLVSDKWKSTITSSELYKVRKELGTTEEWLYLLVKVGENKLMWHGLDPRSQIW 400
RICY +V+LVS +W+S +++SE+Y +RKELG TEEWLY+L K E+KL+W+ LDP S W
Sbjct: 61 RICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTKGHEDKLLWYALDPVSTKW 120
Query: 401 QRLPNMPHVVDEEETRKGSSRLWMWNMV-EGIRIAEVIRGFLGQKD 535
QRLP MP VV EEE+RK S L WNM+ + ++R FLG++D
Sbjct: 121 QRLPPMPVVVYEEESRKSLSGL--WNMITPSFNVGAIVRSFLGRRD 164
>gb|AAM18732.1|AC092548_10 putative kelch-containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 475
Score = 159 bits (402), Expect = 2e-38
Identities = 82/168 (48%), Positives = 114/168 (67%), Gaps = 4/168 (2%)
Frame = +2
Query: 44 MGSFFSVPNTKSDTGDREGVSPNEACKRQRMS-PTLYE--ESPRLIPNLPDELSLQIIAR 214
MG+ S PN+K+ + S ++ K+ RMS P L + P LIP LPDE+SLQI+AR
Sbjct: 1 MGALLSSPNSKNQPWEHGEASKADSSKKLRMSAPPLSGGYDHPGLIPGLPDEISLQILAR 60
Query: 215 LPRICYLNVKLVSDKWKSTITSSELYKVRKELGTTEEWLYLLVKVGENKLMWHGLDPRSQ 394
+PR+ YLN K+VS WK+ IT ELY+VRKELG +EEWLY+L K + KL+W+ DP
Sbjct: 61 MPRMGYLNAKMVSRSWKAAITGVELYRVRKELGVSEEWLYMLTKSDDGKLVWNAFDPVCG 120
Query: 395 IWQRLPNMPHVVDEEETRKGSSRLWMWNMVE-GIRIAEVIRGFLGQKD 535
WQRLP MP + E ++G LW+ +++ GIR+++VIRG+LGQ+D
Sbjct: 121 QWQRLPLMPGISHGGECKRGIPGLWLGDLLSAGIRVSDVIRGWLGQRD 168
>gb|AAL84293.1|AC073556_10 putative Kelch motif containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 493
Score = 85.5 bits (210), Expect = 4e-16
Identities = 35/107 (32%), Positives = 64/107 (59%)
Frame = +2
Query: 101 VSPNEACKRQRMSPTLYEESPRLIPNLPDELSLQIIARLPRICYLNVKLVSDKWKSTITS 280
+ PN+ R ++P L+P LPD+L++ + R+PR+ + N++LV +W ++
Sbjct: 112 IKPNKRKSRSSHKERCRTQAP-LLPGLPDDLAITCLMRVPRLEHTNLRLVCKRWNRLLSG 170
Query: 281 SELYKVRKELGTTEEWLYLLVKVGENKLMWHGLDPRSQIWQRLPNMP 421
+ Y +RK+LG EEW+++ + + K+ WH DP Q+W+ LP +P
Sbjct: 171 NYYYSLRKKLGMAEEWVFVFKRDRDRKISWHAFDPVHQVWKSLPPVP 217
>pir||F96594 unknown protein, 58496-60308 [imported] - Arabidopsis thaliana
gi|12323170|gb|AAG51566.1|AC027034_12 unknown protein;
58496-60308 [Arabidopsis thaliana]
Length = 478
Score = 79.0 bits (193), Expect = 4e-14
Identities = 38/112 (33%), Positives = 63/112 (55%)
Frame = +2
Query: 101 VSPNEACKRQRMSPTLYEESPRLIPNLPDELSLQIIARLPRICYLNVKLVSDKWKSTITS 280
++PN A +R+ P L+P LPD+L++ + R+PR + ++LV +W +
Sbjct: 57 INPN-AHRRKNSKRERTRIQPPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASG 115
Query: 281 SELYKVRKELGTTEEWLYLLVKVGENKLMWHGLDPRSQIWQRLPNMPHVVDE 436
+ Y RK LG +EEW+Y+ + + K+ W+ DP SQ+WQ LP +P E
Sbjct: 116 NFFYSQRKLLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPREYSE 167
>ref|NP_564684.1| expressed protein; protein id: At1g55270.1, supported by cDNA:
gi_13877750, supported by cDNA: gi_15293270 [Arabidopsis
thaliana] gi|13877751|gb|AAK43953.1|AF370138_1 unknown
protein [Arabidopsis thaliana]
gi|15293271|gb|AAK93746.1| unknown protein [Arabidopsis
thaliana]
Length = 434
Score = 79.0 bits (193), Expect = 4e-14
Identities = 38/112 (33%), Positives = 63/112 (55%)
Frame = +2
Query: 101 VSPNEACKRQRMSPTLYEESPRLIPNLPDELSLQIIARLPRICYLNVKLVSDKWKSTITS 280
++PN A +R+ P L+P LPD+L++ + R+PR + ++LV +W +
Sbjct: 57 INPN-AHRRKNSKRERTRIQPPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASG 115
Query: 281 SELYKVRKELGTTEEWLYLLVKVGENKLMWHGLDPRSQIWQRLPNMPHVVDE 436
+ Y RK LG +EEW+Y+ + + K+ W+ DP SQ+WQ LP +P E
Sbjct: 116 NFFYSQRKLLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPREYSE 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,415,588
Number of Sequences: 1393205
Number of extensions: 9687209
Number of successful extensions: 30382
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 29278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30353
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
