Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002183A_C02 KMC002183A_c02
(963 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_715147.1| Predicted GTPases [Wigglesworthia brevipalpis] ... 33 5.0
>ref|NP_715147.1| Predicted GTPases [Wigglesworthia brevipalpis]
gi|25166532|dbj|BAC24722.1| b2511 [Wigglesworthia
brevipalpis]
Length = 456
Score = 33.5 bits (75), Expect = 5.0
Identities = 30/116 (25%), Positives = 53/116 (44%), Gaps = 5/116 (4%)
Frame = +1
Query: 247 DSSVMIIEFTFTTCYRLTLESYKCL*NNDEHLQ-----QRNSQSFFMTCHLKKSFLKDTR 411
+ S++ IE + + ESY L D HL +RN ++FF+ +L +F K+
Sbjct: 71 NQSIIAIEESHVILLVIRYESYGSL---DNHLSIIAFLKRNKKNFFVILNLDDNFNKNYN 127
Query: 412 LEDKFHIQILRVKGLAHKKYIVDSEFNNTFQGTKNLASL*PTKGFTRSSKDWGLSS 579
DK I L + + + ++ ++ F F KN+ F S+K+ +SS
Sbjct: 128 FTDK--IYFLGIDKICYLNFLKENNFKKIF---KNILYPEHLSSFKESNKNNKVSS 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 783,693,381
Number of Sequences: 1393205
Number of extensions: 16400641
Number of successful extensions: 38152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38149
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 54633031304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
