Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002181A_C01 KMC002181A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD00694.1| bifunctional nuclease [Zinnia elegans] 77 1e-13
dbj|BAB18299.1| putative bifunctional nuclease [Oryza sativa (ja... 75 4e-13
ref|NP_680734.1| expressed protein; protein id: At4g21585.1 [Ara... 73 2e-12
gb|AAD00695.1| bifunctional nuclease [Zinnia elegans] 71 6e-12
gb|AAM63596.1| putative bifunctional nuclease [Arabidopsis thali... 70 8e-12
>gb|AAD00694.1| bifunctional nuclease [Zinnia elegans]
Length = 280
Score = 76.6 bits (187), Expect = 1e-13
Identities = 36/46 (78%), Positives = 38/46 (82%)
Frame = -1
Query: 471 ACKWAYADASEGSVLQDDYFLSRFPIVNLRLAQGGVRLAATLNRIF 334
AC WAY + GSVL+DDYFLSR PIVN RLAQGGVRLAA LNRIF
Sbjct: 234 ACNWAYKGVTNGSVLEDDYFLSRLPIVNWRLAQGGVRLAANLNRIF 279
>dbj|BAB18299.1| putative bifunctional nuclease [Oryza sativa (japonica
cultivar-group)]
Length = 311
Score = 74.7 bits (182), Expect = 4e-13
Identities = 35/46 (76%), Positives = 39/46 (84%)
Frame = -1
Query: 471 ACKWAYADASEGSVLQDDYFLSRFPIVNLRLAQGGVRLAATLNRIF 334
AC WAY D +E S+L+D YF SR P+VNLRLAQGGVRLAATLNRIF
Sbjct: 265 ACDWAYKDVTEDSLLEDAYFGSRLPVVNLRLAQGGVRLAATLNRIF 310
>ref|NP_680734.1| expressed protein; protein id: At4g21585.1 [Arabidopsis thaliana]
Length = 299
Score = 72.8 bits (177), Expect = 2e-12
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = -1
Query: 471 ACKWAYADASEGSVLQDDYFLSRFPIVNLRLAQGGVRLAATLNRIFDTE 325
ACK+AY +A+ G+ L DDYFLSR PIV RLAQGG+RLAATLNRIF ++
Sbjct: 245 ACKYAYRNATPGTTLGDDYFLSRLPIVEKRLAQGGIRLAATLNRIFSSK 293
>gb|AAD00695.1| bifunctional nuclease [Zinnia elegans]
Length = 328
Score = 70.9 bits (172), Expect = 6e-12
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = -1
Query: 471 ACKWAYADASEGSVLQDDYFLSRFPIVNLRLAQGGVRLAATLNRIFD 331
+C +AY +A+ GS L D+YF SR PIV +RLAQGGVRLAATLNRIFD
Sbjct: 247 SCNYAYRNATPGSTLGDEYFYSRLPIVEMRLAQGGVRLAATLNRIFD 293
>gb|AAM63596.1| putative bifunctional nuclease [Arabidopsis thaliana]
Length = 290
Score = 70.5 bits (171), Expect = 8e-12
Identities = 33/46 (71%), Positives = 36/46 (77%)
Frame = -1
Query: 471 ACKWAYADASEGSVLQDDYFLSRFPIVNLRLAQGGVRLAATLNRIF 334
AC WAY +EG L+D+YF SR PIV RLAQGGVRLAATLNRIF
Sbjct: 244 ACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIF 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 347,970,480
Number of Sequences: 1393205
Number of extensions: 6250861
Number of successful extensions: 15058
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 14468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15055
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
