Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002178A_C01 KMC002178A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187969.1| hypothetical protein; protein id: At3g13600.1 [... 77 1e-13
ref|NP_565618.1| expressed protein; protein id: At2g26190.1, sup... 67 1e-10
dbj|BAC07110.1| hypothetical protein~similar to Arabidopsis thal... 67 2e-10
pir||T05313 hypothetical protein F26P21.170 - Arabidopsis thalia... 67 2e-10
dbj|BAC42905.1| unknown protein [Arabidopsis thaliana] 64 1e-09
>ref|NP_187969.1| hypothetical protein; protein id: At3g13600.1 [Arabidopsis
thaliana] gi|11994562|dbj|BAB02602.1|
emb|CAB68186.1~gene_id:K20M4.4~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 605
Score = 77.0 bits (188), Expect = 1e-13
Identities = 34/46 (73%), Positives = 39/46 (83%)
Frame = -3
Query: 422 QIKPCPLGKQLSCKWTSGVGPRIGCVRGYPCEVQFRALEQVNLSPK 285
+ K LGKQLSCKWT+G GPRIGCVR YP E+QF+ALEQVNLSP+
Sbjct: 522 ETKSFQLGKQLSCKWTTGAGPRIGCVRDYPSELQFQALEQVNLSPR 567
>ref|NP_565618.1| expressed protein; protein id: At2g26190.1, supported by cDNA:
gi_16930468, supported by cDNA: gi_20453236 [Arabidopsis
thaliana] gi|25367179|pir||E84657 hypothetical protein
At2g26190 [imported] - Arabidopsis thaliana
gi|3075398|gb|AAC14530.1| expressed protein [Arabidopsis
thaliana] gi|16930469|gb|AAL31920.1|AF419588_1
At2g26190/T1D16.17 [Arabidopsis thaliana]
gi|20453237|gb|AAM19857.1| At2g26190/T1D16.17
[Arabidopsis thaliana] gi|22135809|gb|AAM91091.1|
At2g26190/T1D16.17 [Arabidopsis thaliana]
Length = 532
Score = 67.0 bits (162), Expect = 1e-10
Identities = 38/85 (44%), Positives = 52/85 (60%), Gaps = 11/85 (12%)
Frame = -3
Query: 506 ELTNLEISKIDQETTQAFEAELD--KTILNQIKP---------CPLGKQLSCKWTSGVGP 360
E ++ S ++E T+ EAE +TI+ + + L K+LSCKW SGVGP
Sbjct: 404 EYSSFNSSGYEEEATKEEEAEKKPAETIVTEEQEEEKERERPVFQLAKRLSCKWNSGVGP 463
Query: 359 RIGCVRGYPCEVQFRALEQVNLSPK 285
RIGCVR YP E+Q +A EQV+LSP+
Sbjct: 464 RIGCVRDYPMELQSQAFEQVSLSPR 488
>dbj|BAC07110.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 3,
At3g13600 [Oryza sativa (japonica cultivar-group)]
gi|22296385|dbj|BAC10154.1| P0519E12.30 [Oryza sativa
(japonica cultivar-group)]
Length = 585
Score = 66.6 bits (161), Expect = 2e-10
Identities = 31/46 (67%), Positives = 36/46 (77%)
Frame = -3
Query: 422 QIKPCPLGKQLSCKWTSGVGPRIGCVRGYPCEVQFRALEQVNLSPK 285
+ K LGKQLS KWT+G GPRI CVR YP E+Q RALEQV+LSP+
Sbjct: 491 EAKSYQLGKQLSFKWTTGAGPRIVCVRDYPSELQLRALEQVHLSPR 536
>pir||T05313 hypothetical protein F26P21.170 - Arabidopsis thaliana
gi|3688186|emb|CAA21214.1| putative protein [Arabidopsis
thaliana] gi|7270252|emb|CAB80022.1| putative protein
[Arabidopsis thaliana]
Length = 488
Score = 66.6 bits (161), Expect = 2e-10
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -3
Query: 398 KQLSCKWTSGVGPRIGCVRGYPCEVQFRALEQVNLSPK 285
K+LSCKWTSG GPRIGCVR YP E+Q +ALEQV+LSP+
Sbjct: 413 KRLSCKWTSGYGPRIGCVRDYPMELQAQALEQVSLSPR 450
>dbj|BAC42905.1| unknown protein [Arabidopsis thaliana]
Length = 87
Score = 63.9 bits (154), Expect = 1e-09
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = -3
Query: 398 KQLSCKWTSGVGPRIGCVRGYPCEVQFRALEQVNLSPK 285
K+ SCKW++G GPRIGCVR YP ++Q RALEQVNLSP+
Sbjct: 13 KRFSCKWSTGNGPRIGCVRDYPMDLQTRALEQVNLSPR 50
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,188,500
Number of Sequences: 1393205
Number of extensions: 9897555
Number of successful extensions: 19823
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 19390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19816
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
