Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002175A_C01 KMC002175A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC33489.1| unnamed protein product [Mus musculus] 42 0.005
ref|NP_663433.1| similar to CG8726 gene product [Mus musculus] g... 42 0.005
emb|CAA46515.1| proline-rich antigen [Mycobacterium leprae] 41 0.007
ref|NP_302551.1| proline rich antigenic protein [Mycobacterium l... 41 0.007
ref|XP_206076.1| hypothetical protein XP_206076 [Mus musculus] 40 0.011
>dbj|BAC33489.1| unnamed protein product [Mus musculus]
Length = 581
Score = 41.6 bits (96), Expect = 0.005
Identities = 37/85 (43%), Positives = 46/85 (53%), Gaps = 3/85 (3%)
Frame = +2
Query: 248 QKRRRLGSIFKPNRSLTERAK*KQQQKKQA*HSYPTLSLSSISS-LSSLSSPNKISQN-- 418
+KRR++ + K RS E ++ +Q K HS S S SS L+S SSP S
Sbjct: 456 RKRRKILARKKSKRSAVENSE--EQPVK---HSNSNNSGSGASSPLTSPSSPTPPSTAGL 510
Query: 419 SSSLPPPPPSSSSHPPSPPAKPSYT 493
SS+LPPPPP PP PPA PS T
Sbjct: 511 SSALPPPPPPPP--PPPPPAGPSPT 533
Score = 33.1 bits (74), Expect = 1.8
Identities = 32/102 (31%), Positives = 46/102 (44%), Gaps = 10/102 (9%)
Frame = +2
Query: 224 LYKDEIKIQKRRRLGSIFKPNRSLTERAK*KQQQKKQA*HS-------YPTLSLSSISSL 382
L +++ +I + RRL + S ER + K +K++ S P +S +S
Sbjct: 430 LTEEQKQIHQHRRLTRAQSHHGSEEERKRRKILARKKSKRSAVENSEEQPVKHSNSNNSG 489
Query: 383 SSLSSPNKISQNSSSLPPPPPS---SSSHPPSPPAKPSYTPP 499
S SSP S S P PP + SS+ PP PP P PP
Sbjct: 490 SGASSP----LTSPSSPTPPSTAGLSSALPPPPPPPPPPPPP 527
>ref|NP_663433.1| similar to CG8726 gene product [Mus musculus]
gi|16359349|gb|AAH16131.1| Similar to hypothetical
protein FLJ20335 [Mus musculus]
Length = 582
Score = 41.6 bits (96), Expect = 0.005
Identities = 27/82 (32%), Positives = 45/82 (53%)
Frame = +2
Query: 248 QKRRRLGSIFKPNRSLTERAK*KQQQKKQA*HSYPTLSLSSISSLSSLSSPNKISQNSSS 427
+KRR++ + K RS E ++ + + + +S + + S ++S SS + P+ +S+
Sbjct: 456 RKRRKILARKKSKRSAVENSEEQPVKHSNSNNSAGSGASSPLTSPSSPTPPSTAGLSSAL 515
Query: 428 LPPPPPSSSSHPPSPPAKPSYT 493
PPPPP PP PPA PS T
Sbjct: 516 PPPPPPPP---PPPPPAGPSPT 534
Score = 32.0 bits (71), Expect = 4.0
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Frame = +2
Query: 224 LYKDEIKIQKRRRLGSIFKPNRSLTERAK*K----QQQKKQA*HSYPTLSLSSISSLSSL 391
L +++ +I + RRL + S ER + K ++ K+ A + + +S +S
Sbjct: 430 LTEEQKQIHQHRRLTRAQSHHGSEEERKRRKILARKKSKRSAVENSEEQPVKHSNSNNSA 489
Query: 392 SSPNKISQNSSSLPPPPPS---SSSHPPSPPAKPSYTPP 499
S S S P PP + SS+ PP PP P PP
Sbjct: 490 GSGASSPLTSPSSPTPPSTAGLSSALPPPPPPPPPPPPP 528
>emb|CAA46515.1| proline-rich antigen [Mycobacterium leprae]
Length = 249
Score = 41.2 bits (95), Expect = 0.007
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +2
Query: 374 SSLSSLSSPNKISQNSSSLPPPPPSSSSHPPSPPAKPSYTPP 499
S L S P S PPPPP S+PP PP SY PP
Sbjct: 32 SELGSAYPPPTAPPVGGSYPPPPPPGGSYPPPPPPGGSYPPP 73
Score = 39.3 bits (90), Expect = 0.025
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 425 SLPPPPPSSSSHPPSPPAKPSYTPP 499
S PPPPP S+PP PP+ +Y PP
Sbjct: 59 SYPPPPPPGGSYPPPPPSTGAYAPP 83
>ref|NP_302551.1| proline rich antigenic protein [Mycobacterium leprae]
gi|13432206|sp|P41484|PRA_MYCLE Proline-rich antigen (36
kDa antigen) gi|80644|pir||A41497 36K antigen pra -
Mycobacterium leprae gi|699272|gb|AAA63035.1| ag36
[Mycobacterium leprae] gi|13093981|emb|CAC31911.1|
proline rich antigenic protein [Mycobacterium leprae]
Length = 249
Score = 41.2 bits (95), Expect = 0.007
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +2
Query: 374 SSLSSLSSPNKISQNSSSLPPPPPSSSSHPPSPPAKPSYTPP 499
S L S P S PPPPP S+PP PP SY PP
Sbjct: 32 SELGSAYPPPTAPPVGGSYPPPPPPGGSYPPPPPPGGSYPPP 73
Score = 39.3 bits (90), Expect = 0.025
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 425 SLPPPPPSSSSHPPSPPAKPSYTPP 499
S PPPPP S+PP PP+ +Y PP
Sbjct: 59 SYPPPPPPGGSYPPPPPSTGAYAPP 83
>ref|XP_206076.1| hypothetical protein XP_206076 [Mus musculus]
Length = 241
Score = 40.4 bits (93), Expect = 0.011
Identities = 23/43 (53%), Positives = 25/43 (57%)
Frame = -1
Query: 486 DGFAGGDGGWEEEEGGGGGSEEEF*EILFGEEREEREEIEERE 358
+G GG GG GGGGG EEE E EE EE EE EE+E
Sbjct: 143 EGGRGGGGGGGGGGGGGGGEEEEEEEEEEEEEEEEEEEEEEKE 185
Score = 37.7 bits (86), Expect = 0.073
Identities = 24/47 (51%), Positives = 25/47 (53%)
Frame = -1
Query: 483 GFAGGDGGWEEEEGGGGGSEEEF*EILFGEEREEREEIEERESVGYE 343
G GG GG GGGGG EEE E EE EE EE EE + G E
Sbjct: 148 GGGGGGGG-----GGGGGGEEEEEEEEEEEEEEEEEEEEEEKERGKE 189
Score = 32.3 bits (72), Expect = 3.1
Identities = 22/47 (46%), Positives = 25/47 (52%)
Frame = -1
Query: 498 GGVYDGFAGGDGGWEEEEGGGGGSEEEF*EILFGEEREEREEIEERE 358
GG G GG GG EEEE EEE E EE EE+E +E+E
Sbjct: 149 GGGGGGGGGGGGGEEEEEEEEEEEEEEEEE----EEEEEKERGKEKE 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,847,052
Number of Sequences: 1393205
Number of extensions: 9904867
Number of successful extensions: 166925
Number of sequences better than 10.0: 1616
Number of HSP's better than 10.0 without gapping: 70827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135627
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
