Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002172A_C01 KMC002172A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_500028.1| Predicted CDS, putative protein family member, ... 32 3.8
ref|NP_813098.1| exo-poly-alpha-D-galacturonosidase precursor [B... 32 4.9
gb|AAL67901.1| lycopene biosynthesis-enhancing protein [Tetrahym... 32 4.9
>ref|NP_500028.1| Predicted CDS, putative protein family member, with a coiled coil-4
domain, nematode specific [Caenorhabditis elegans]
gi|7332105|gb|AAF60792.1| Hypothetical protein
Y55F3AM.11 [Caenorhabditis elegans]
Length = 323
Score = 32.0 bits (71), Expect = 3.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 344 WCMNPLICSIPSIQSFQGLNNWFT*KYSWISLT 442
W NP C S+ GLNNW T + W LT
Sbjct: 141 WVCNPWKCPNNSVMFSLGLNNWITFEEEWQKLT 173
>ref|NP_813098.1| exo-poly-alpha-D-galacturonosidase precursor [Bacteroides
thetaiotaomicron VPI-5482] gi|29341505|gb|AAO79292.1|
exo-poly-alpha-D-galacturonosidase precursor
[Bacteroides thetaiotaomicron VPI-5482]
Length = 538
Score = 31.6 bits (70), Expect = 4.9
Identities = 9/26 (34%), Positives = 18/26 (68%)
Frame = +2
Query: 338 PNWCMNPLICSIPSIQSFQGLNNWFT 415
P+WC++PL C ++ + Q +N W++
Sbjct: 261 PSWCLHPLSCEDFTVNNIQVINPWYS 286
>gb|AAL67901.1| lycopene biosynthesis-enhancing protein [Tetrahymena thermophila]
Length = 380
Score = 31.6 bits (70), Expect = 4.9
Identities = 18/42 (42%), Positives = 23/42 (53%)
Frame = -3
Query: 474 NVTVMSSKXRNVREIQEYFHVNQLFXPWKLWILGIEQINGFI 349
N TV S R +R I H+N L+ KLW+L I I+ FI
Sbjct: 155 NFTVNSEVERVLRVI---LHINSLYISLKLWLLKIYNISSFI 193
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 344,799,815
Number of Sequences: 1393205
Number of extensions: 6077838
Number of successful extensions: 13034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13030
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
