Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002170A_C01 KMC002170A_c01
(425 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_765050.1| conserved hypothetical protein [Staphylococcus ... 31 3.1
ref|NP_523778.2| Dicer-2 CG6493-PA gi|21627058|gb|AAF57830.2| CG... 31 3.1
gb|ZP_00122982.1| hypothetical protein [Haemophilus somnus 129PT] 31 4.1
dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila ... 31 4.1
ref|XP_143660.1| similar to Protein transport protein Sec23A (SE... 30 5.3
>ref|NP_765050.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228] gi|27315960|gb|AAO05094.1|AE016749_40 conserved
hypothetical protein [Staphylococcus epidermidis ATCC
12228]
Length = 859
Score = 31.2 bits (69), Expect = 3.1
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 23 NQQVAAMPYCANTLKHRISSSMHSEVPKLQGYTRGDTYMLHMMSQ 157
N+ V +MPY L HRI+ S +E+P+L + D H++SQ
Sbjct: 715 NEGVTSMPYRYEFLAHRINPSKRAEIPELSKHKYLD-LNTHIVSQ 758
>ref|NP_523778.2| Dicer-2 CG6493-PA gi|21627058|gb|AAF57830.2| CG6493-PA [Drosophila
melanogaster]
Length = 1722
Score = 31.2 bits (69), Expect = 3.1
Identities = 17/49 (34%), Positives = 28/49 (56%)
Frame = -1
Query: 176 VIWHSTFETSYVTYMYHPLYTLVVLVLLNA*MMKFYVSMCLHNMALQPL 30
V+ ++T T + H L V L++A + KFYVS+ L N+ +QP+
Sbjct: 211 VMLYATKPTEVMVSFPHQEQVLTVTRLISAEIEKFYVSLDLMNIGVQPI 259
>gb|ZP_00122982.1| hypothetical protein [Haemophilus somnus 129PT]
Length = 707
Score = 30.8 bits (68), Expect = 4.1
Identities = 19/62 (30%), Positives = 28/62 (44%)
Frame = +1
Query: 226 PNVNKQL*ILHDLWESYCYRYN*DGTWVSLDLAFSKFGTTSIIACKVIFFTCFRGSNHQE 405
PN+ L L D+W+ R GT +D + + G T +C FTC + NH
Sbjct: 613 PNIQHNLKALEDVWDYSYERVPYYGTNTPIDECY-ECGFTGEFSCTSKGFTCPKCGNHDS 671
Query: 406 KK 411
+K
Sbjct: 672 EK 673
>dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster]
Length = 1722
Score = 30.8 bits (68), Expect = 4.1
Identities = 17/49 (34%), Positives = 27/49 (54%)
Frame = -1
Query: 176 VIWHSTFETSYVTYMYHPLYTLVVLVLLNA*MMKFYVSMCLHNMALQPL 30
V+ ++T T + H L V L++A + KFYVS+ L N +QP+
Sbjct: 211 VMLYATKPTEVLVSFPHQEQVLTVTRLISAEIEKFYVSLDLMNFGVQPI 259
>ref|XP_143660.1| similar to Protein transport protein Sec23A (SEC23-related protein
A) [Mus musculus]
Length = 280
Score = 30.4 bits (67), Expect = 5.3
Identities = 15/48 (31%), Positives = 26/48 (53%)
Frame = +3
Query: 240 ATLNFARPLGIILLQIQLRWNLGLPGPGFLQVWDHINHSMQSHFLHLF 383
A L+F R G +L+++++ L L + H +HS +H +HLF
Sbjct: 136 ALLHFRRTGGHMLIKVRIISGLSLAAGPHCTPFSHSDHSHNTHSIHLF 183
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,861,335
Number of Sequences: 1393205
Number of extensions: 8628069
Number of successful extensions: 17699
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17687
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
