Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002169A_C01 KMC002169A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P48513|TF2B_SOYBN Transcription initiation factor IIB (Genera... 223 9e-58
emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana] 219 2e-56
ref|NP_187644.1| transcription initiation factor IIB (TFIIB); pr... 219 2e-56
ref|NP_181694.1| transcription factor IIB (TFIIB); protein id: A... 211 4e-54
sp|Q8W0W3|TF2B_ORYSA Transcription initiation factor IIB (Genera... 207 9e-53
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB (General transcription factor
TFIIB) gi|7443551|pir||T06440 probable transcription
initiation factor TFIIB - soybean
gi|945087|gb|AAB09756.1| transcription factor TFIIB
[Glycine max]
Length = 313
Score = 223 bits (569), Expect = 9e-58
Identities = 112/120 (93%), Positives = 115/120 (95%)
Frame = -2
Query: 552 IVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISI 373
IVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNNQAVKAAQEAVQKSEEFDIRRSPISI
Sbjct: 191 IVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISI 250
Query: 372 TAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYQDLYPHVSKIIPTWYAKEEDLKNL 193
AAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSY+DLYPHVSKIIP WYAKEEDLKNL
Sbjct: 251 AAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNL 310
>emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
Length = 301
Score = 219 bits (558), Expect = 2e-56
Identities = 108/122 (88%), Positives = 115/122 (93%)
Frame = -2
Query: 552 IVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISI 373
IVKQLGLE GQ VEMGTIHAGDFMRRFCSNLGM NQ VKAAQE+VQKSEEFDIRRSPISI
Sbjct: 179 IVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIRRSPISI 238
Query: 372 TAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYQDLYPHVSKIIPTWYAKEEDLKNL 193
AAVIYIITQLSD+KKPL+DIS+ATGVAEGTIRNSY+DLYPH+SKIIP WYAKEEDLKNL
Sbjct: 239 AAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNL 298
Query: 192 ST 187
+
Sbjct: 299 QS 300
>ref|NP_187644.1| transcription initiation factor IIB (TFIIB); protein id:
At3g10330.1, supported by cDNA: 38950., supported by
cDNA: gi_15215783, supported by cDNA: gi_16974426
[Arabidopsis thaliana] gi|21363045|sp|Q9SS44|TFB2_ARATH
Transcription initiation factor IIB-2 (General
transcription factor TFIIB-2) (AtTFIIB2)
gi|6056193|gb|AAF02810.1|AC009400_6 transcription
initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7
[Arabidopsis thaliana] gi|16974427|gb|AAL31139.1|
AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|21593436|gb|AAM65403.1| transcription initiation
factor IIB (TFIIB) [Arabidopsis thaliana]
Length = 312
Score = 219 bits (558), Expect = 2e-56
Identities = 108/122 (88%), Positives = 115/122 (93%)
Frame = -2
Query: 552 IVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISI 373
IVKQLGLE GQ VEMGTIHAGDFMRRFCSNLGM NQ VKAAQE+VQKSEEFDIRRSPISI
Sbjct: 190 IVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIRRSPISI 249
Query: 372 TAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYQDLYPHVSKIIPTWYAKEEDLKNL 193
AAVIYIITQLSD+KKPL+DIS+ATGVAEGTIRNSY+DLYPH+SKIIP WYAKEEDLKNL
Sbjct: 250 AAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNL 309
Query: 192 ST 187
+
Sbjct: 310 QS 311
>ref|NP_181694.1| transcription factor IIB (TFIIB); protein id: At2g41630.1,
supported by cDNA: 2657., supported by cDNA:
gi_20260321, supported by cDNA: gi_945084 [Arabidopsis
thaliana] gi|1351221|sp|P48512|TFB1_ARATH Transcription
initiation factor IIB-1 (General transcription factor
TFIIB-1) (AtTFIIB1) gi|7443550|pir||T00819 transcription
initiation factor IIB - Arabidopsis thaliana
gi|945085|gb|AAB09755.1| transcription factor TFIIB
[Arabidopsis thaliana] gi|2618697|gb|AAB84344.1|
transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|20260322|gb|AAM13059.1| transcription factor IIB
[Arabidopsis thaliana] gi|21554842|gb|AAM63705.1|
transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|22136182|gb|AAM91169.1| transcription factor IIB
[Arabidopsis thaliana]
Length = 312
Score = 211 bits (538), Expect = 4e-54
Identities = 106/122 (86%), Positives = 113/122 (91%)
Frame = -2
Query: 552 IVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISI 373
IVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N AVKAAQEAVQKSEEFDIRRSPISI
Sbjct: 190 IVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDIRRSPISI 249
Query: 372 TAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYQDLYPHVSKIIPTWYAKEEDLKNL 193
A VIYIITQLSDDKK LKDIS ATGVAEGTIRNSY+DLYPH+SKI P+WYAKEEDLKNL
Sbjct: 250 AAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNL 309
Query: 192 ST 187
S+
Sbjct: 310 SS 311
>sp|Q8W0W3|TF2B_ORYSA Transcription initiation factor IIB (General transcription factor
TFIIB) gi|18481632|gb|AAL73491.1|AF464908_1 general
transcription factor TFIIB [Oryza sativa]
Length = 312
Score = 207 bits (526), Expect = 9e-53
Identities = 103/122 (84%), Positives = 113/122 (92%)
Frame = -2
Query: 552 IVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISI 373
IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNNQAVKAAQEAVQ+SEE DIRRSPISI
Sbjct: 190 IVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISI 249
Query: 372 TAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYQDLYPHVSKIIPTWYAKEEDLKNL 193
AAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRNSY+DLYP+ S++IP YAKEEDLKNL
Sbjct: 250 AAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNL 309
Query: 192 ST 187
T
Sbjct: 310 CT 311
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,393,660
Number of Sequences: 1393205
Number of extensions: 9112007
Number of successful extensions: 21457
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 19709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21282
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
