Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002168A_C02 KMC002168A_c02
(713 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JA0049 Tubulin beta-2 chain - soybean 139 3e-32
sp|P12460|TBB2_SOYBN TUBULIN BETA-2 CHAIN gi|170062|gb|AAA34010.... 139 3e-32
sp|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin) gi|62... 136 3e-31
pir||S20869 tubulin beta-2 chain - garden pea (fragment) 135 7e-31
sp|P29502|TBB3_PEA TUBULIN BETA-3 CHAIN gi|81953|pir||S20870 tub... 135 7e-31
>pir||JA0049 Tubulin beta-2 chain - soybean
Length = 449
Score = 139 bits (351), Expect = 3e-32
Identities = 66/67 (98%), Positives = 67/67 (99%)
Frame = -2
Query: 712 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEY 533
EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATADEDEY
Sbjct: 376 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEDEY 435
Query: 532 EEEEEEE 512
EEEEEEE
Sbjct: 436 EEEEEEE 442
>sp|P12460|TBB2_SOYBN TUBULIN BETA-2 CHAIN gi|170062|gb|AAA34010.1| S-beta-1 tubulin
Length = 449
Score = 139 bits (351), Expect = 3e-32
Identities = 66/67 (98%), Positives = 67/67 (99%)
Frame = -2
Query: 712 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEY 533
EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATADEDEY
Sbjct: 376 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEDEY 435
Query: 532 EEEEEEE 512
EEEEEEE
Sbjct: 436 EEEEEEE 442
>sp|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin) gi|629840|pir||S43328 tubulin
beta-7 chain - maize gi|416149|gb|AAA19708.1| beta-7
tubulin
Length = 445
Score = 136 bits (343), Expect = 3e-31
Identities = 64/67 (95%), Positives = 67/67 (99%)
Frame = -2
Query: 712 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEY 533
EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA+++EY
Sbjct: 376 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAEDEEY 435
Query: 532 EEEEEEE 512
EEEEEEE
Sbjct: 436 EEEEEEE 442
>pir||S20869 tubulin beta-2 chain - garden pea (fragment)
Length = 448
Score = 135 bits (339), Expect = 7e-31
Identities = 63/66 (95%), Positives = 66/66 (99%)
Frame = -2
Query: 712 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEY 533
EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA+EDEY
Sbjct: 375 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEDEY 434
Query: 532 EEEEEE 515
EEEEE+
Sbjct: 435 EEEEED 440
>sp|P29502|TBB3_PEA TUBULIN BETA-3 CHAIN gi|81953|pir||S20870 tubulin beta-3 chain -
garden pea (fragment) gi|388255|emb|CAA38615.1|
beta-tubulin 3 [Pisum sativum]
Length = 440
Score = 135 bits (339), Expect = 7e-31
Identities = 65/69 (94%), Positives = 68/69 (98%), Gaps = 1/69 (1%)
Frame = -2
Query: 712 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADED-E 536
EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATADE+ E
Sbjct: 367 EMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGE 426
Query: 535 YEEEEEEEP 509
YE+EEEEEP
Sbjct: 427 YEDEEEEEP 435
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,025,834
Number of Sequences: 1393205
Number of extensions: 11999730
Number of successful extensions: 102232
Number of sequences better than 10.0: 1118
Number of HSP's better than 10.0 without gapping: 53698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78624
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
