Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002165A_C01 KMC002165A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL58106.1|AF395063_1 CSN complex subunit 6A [Arabidopsis tha... 90 3e-17
ref|NP_568839.1| COP9 complex subunit 6 CSN6, putative; protein ... 90 3e-17
gb|AAO42068.1| putative COP9 complex subunit 6 CSN6 [Arabidopsis... 90 3e-17
dbj|BAB08872.1| transcription factor-like; similar to CH6 and CO... 90 3e-17
gb|AAL85984.1| unknown protein [Arabidopsis thaliana] 87 1e-16
>gb|AAL58106.1|AF395063_1 CSN complex subunit 6A [Arabidopsis thaliana]
Length = 317
Score = 89.7 bits (221), Expect = 3e-17
Identities = 41/51 (80%), Positives = 47/51 (91%)
Frame = -1
Query: 605 QDDFLMGYNDTLLISYLTMLTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM 453
QD+FLM YND LLI+YL M+TNCSS MNE+VDKFNTAYDR++RRGGRTAFM
Sbjct: 267 QDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTRRGGRTAFM 317
>ref|NP_568839.1| COP9 complex subunit 6 CSN6, putative; protein id: At5g56280.1,
supported by cDNA: gi_18056664 [Arabidopsis thaliana]
gi|15809663|gb|AAL07275.1| COP9 complex subunit 6
[Arabidopsis thaliana]
Length = 317
Score = 89.7 bits (221), Expect = 3e-17
Identities = 41/51 (80%), Positives = 47/51 (91%)
Frame = -1
Query: 605 QDDFLMGYNDTLLISYLTMLTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM 453
QD+FLM YND LLI+YL M+TNCSS MNE+VDKFNTAYDR++RRGGRTAFM
Sbjct: 267 QDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTRRGGRTAFM 317
>gb|AAO42068.1| putative COP9 complex subunit 6 CSN6 [Arabidopsis thaliana]
Length = 223
Score = 89.7 bits (221), Expect = 3e-17
Identities = 41/51 (80%), Positives = 47/51 (91%)
Frame = -1
Query: 605 QDDFLMGYNDTLLISYLTMLTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM 453
QD+FLM YND LLI+YL M+TNCSS MNE+VDKFNTAYDR++RRGGRTAFM
Sbjct: 173 QDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTRRGGRTAFM 223
>dbj|BAB08872.1| transcription factor-like; similar to CH6 and COP9 complex subunit
6 [Arabidopsis thaliana]
Length = 286
Score = 89.7 bits (221), Expect = 3e-17
Identities = 41/51 (80%), Positives = 47/51 (91%)
Frame = -1
Query: 605 QDDFLMGYNDTLLISYLTMLTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM 453
QD+FLM YND LLI+YL M+TNCSS MNE+VDKFNTAYDR++RRGGRTAFM
Sbjct: 236 QDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRNTRRGGRTAFM 286
>gb|AAL85984.1| unknown protein [Arabidopsis thaliana]
Length = 223
Score = 87.4 bits (215), Expect = 1e-16
Identities = 39/50 (78%), Positives = 46/50 (92%)
Frame = -1
Query: 602 DDFLMGYNDTLLISYLTMLTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM 453
++FLM YND LL+SYL M+TNC+S MNE+VDKFNTAYD+HSRRGGRTAFM
Sbjct: 174 ENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKHSRRGGRTAFM 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,451,593
Number of Sequences: 1393205
Number of extensions: 10189767
Number of successful extensions: 27332
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 26422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27310
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
