Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002164A_C01 KMC002164A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40914.1| OSJNBa0088K19.5 [Oryza sativa (japonica cultivar... 64 2e-09
gb|EAA12345.1| agCP11073 [Anopheles gambiae str. PEST] 34 0.003
ref|NP_031941.1| etoposide induced 2.4 mRNA [Mus musculus] gi|81... 41 0.013
gb|AAH02390.1|AAH02390 Similar to etoposide-induced mRNA [Homo s... 41 0.013
ref|NP_004870.2| etoposide-induced mRNA [Homo sapiens] gi|813463... 40 0.030
>emb|CAD40914.1| OSJNBa0088K19.5 [Oryza sativa (japonica cultivar-group)]
Length = 283
Score = 63.5 bits (153), Expect = 2e-09
Identities = 31/51 (60%), Positives = 34/51 (65%)
Frame = +2
Query: 77 QAKAACFLWLEGYREACCLHRVLILCLRSRRLLVRTGQCFLLNGFIFLGSI 229
QAK A LWL G+ +A LHRV+ C SR L R QCFLLNGFIFLG I
Sbjct: 7 QAKPAAVLWLAGFLQAARLHRVVSFCASSRPLSARIAQCFLLNGFIFLGRI 57
Score = 45.1 bits (105), Expect = 7e-04
Identities = 31/90 (34%), Positives = 46/90 (50%), Gaps = 9/90 (10%)
Frame = +3
Query: 357 YSFSLFYVLWFYPLY---------VFSIILSTIWYNDIAKYGYAAMGRSNFTEKKGSSQN 509
Y FS+ +LW Y L +++ I + YNDIAK+ + R + K + +
Sbjct: 87 YPFSICGMLWDYELKHKIFQCNYSLYAFISLNLKYNDIAKHALDVVKRKSLDATK--ALD 144
Query: 510 SPTIQNAHHAKKPSGLGGVMIGIGEQVYSL 599
+ TI + +KP G V IGIGEQVYS+
Sbjct: 145 AHTISES--TEKPEGFDEVAIGIGEQVYSI 172
>gb|EAA12345.1| agCP11073 [Anopheles gambiae str. PEST]
Length = 394
Score = 34.3 bits (77), Expect(2) = 0.003
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 369 LFYVLWFYPLYVFSIILSTIWYNDIAKYGYAAMGRSNFTEKKGSSQNSPTI 521
LF LW PL++ S I++++W+ DIA Y +KG Q P+I
Sbjct: 137 LFNSLWVTPLFLLSKIVNSLWFQDIADSAYKF--------RKGRPQLMPSI 179
Score = 27.7 bits (60), Expect(2) = 0.003
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 155 LRSRRLLVRTGQCFLLNGFIFLGSIFVLSSVVIP 256
+ ++L R QC +LNG IF+ SI V+P
Sbjct: 74 IEESKVLKRVLQCSMLNGGIFMLSILFFEYAVLP 107
>ref|NP_031941.1| etoposide induced 2.4 mRNA [Mus musculus]
gi|8134638|sp|Q61070|PIG8_MOUSE ETOPOSIDE INDUCED
PROTEIN 2.4 gi|6468764|gb|AAC52483.2| EI24 [Mus
musculus]
Length = 358
Score = 40.8 bits (94), Expect = 0.013
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 354 FYSFSLFYVLWFYPLYVFSIILSTIWYNDIAKYGYAAMGR 473
F+ S+F LW PL+V S +++ IW+ DIA + GR
Sbjct: 138 FFLTSIFSALWVLPLFVLSKVVNAIWFQDIADLAFEVSGR 177
>gb|AAH02390.1|AAH02390 Similar to etoposide-induced mRNA [Homo sapiens]
Length = 340
Score = 40.8 bits (94), Expect = 0.013
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 354 FYSFSLFYVLWFYPLYVFSIILSTIWYNDIAKYGYAAMGR 473
F+ S+F LW PL+V S +++ IW+ DIA + GR
Sbjct: 120 FFLTSIFSALWVLPLFVLSKVVNAIWFQDIADLAFEVSGR 159
>ref|NP_004870.2| etoposide-induced mRNA [Homo sapiens]
gi|8134634|sp|O14681|PIG8_HUMAN p53-induced protein 8
gi|6468762|gb|AAC39531.2| Pig8 [Homo sapiens]
Length = 359
Score = 39.7 bits (91), Expect = 0.030
Identities = 15/40 (37%), Positives = 24/40 (59%)
Frame = +3
Query: 354 FYSFSLFYVLWFYPLYVFSIILSTIWYNDIAKYGYAAMGR 473
F+ S+F +W PL+V S +++ IW+ DIA + GR
Sbjct: 139 FFLTSIFSAVWVLPLFVLSKVVNAIWFQDIADLAFEVSGR 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,297,196
Number of Sequences: 1393205
Number of extensions: 11389850
Number of successful extensions: 36349
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 35437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36333
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
