KMC002163A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC002163A_C01 KMC002163A_c01
gtgtttggGATCAGAGAATGCAATGCATCATAAGACCGTAATTGAACGGCTCGGACAAGT
TCAAATTGACATCACGTGAAACATATTAACCCAAAAGCACTGTGGAGAGGATTAAAAGTC
CACAAACCCCCTAATTGACAACAACGGGTAAAATCTCCCTATGCTTCGGGACCCCATAGT
AACAACAAAGAGCGTGTTAAACTATTAGTAGGGGTAGGAACTTGTCAATCCCTGTGAGTA
TACCATGAAGTCAGAAAGGTGGTACCAGTGAACCAACTCCGTCCTCTTTTTGGGGGCCAA
ACTAGTCACAATTTAAAACAAATAGTGCACTTCCGTGCACTTCCACTGCCGTTGATAACG
TCCCCGTGCATTATTACTGTGTCACTTCCACTCCATATTTCACTGCCCTTGCAAGAACTG
AAGTCTTTGCCTGGAAGAACCTTAGCCAGGTCTGATGTCTGCACAGACATCACTGCCTTT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002163A_C01 KMC002163A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO13261.1| photosystem II D2 protein [Ephedra sinica] 119 2e-26
gb|AAG26167.1| photosystem II D2 protein [Calycanthus floridus] ... 119 2e-26
gb|AAG26165.1| photosystem II D2 protein [Cabomba caroliniana] g... 119 2e-26
gb|AAG44374.1| photosystem II D2 protein [Amborella trichopoda] ... 119 2e-26
gb|AAF82675.1| photosystem II D2 protein [Nymphaea odorata] gi|2... 119 2e-26
>gb|AAO13261.1| photosystem II D2 protein [Ephedra sinica]
Length = 326
Score = 119 bits (298), Expect = 2e-26
Identities = 62/97 (63%), Positives = 66/97 (67%), Gaps = 12/97 (12%)
Frame = -2
Query: 275 WFTGTTFLTSWYTHR------------D*QVPTPTNSLTRSLLLLWGPEA*GDFTRCCQL 132
WFTGTTF+TSWYTH V TP NSL SLLLLWGPEA GDFTR CQL
Sbjct: 22 WFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQL 81
Query: 131 GGLWTFNPLHSAFGLICFT*CQFELVRAVQLRSYDAL 21
GGLWTF LH AFGLI F QFEL R+VQLR Y+A+
Sbjct: 82 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAI 118
>gb|AAG26167.1| photosystem II D2 protein [Calycanthus floridus]
gi|27435887|gb|AAO13270.1| photosystem II D2 protein
[Magnolia stellata] gi|27435908|gb|AAO13283.1|
photosystem II D2 protein [Sciadopitys verticillata]
Length = 326
Score = 119 bits (298), Expect = 2e-26
Identities = 62/97 (63%), Positives = 66/97 (67%), Gaps = 12/97 (12%)
Frame = -2
Query: 275 WFTGTTFLTSWYTHR------------D*QVPTPTNSLTRSLLLLWGPEA*GDFTRCCQL 132
WFTGTTF+TSWYTH V TP NSL SLLLLWGPEA GDFTR CQL
Sbjct: 22 WFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQL 81
Query: 131 GGLWTFNPLHSAFGLICFT*CQFELVRAVQLRSYDAL 21
GGLWTF LH AFGLI F QFEL R+VQLR Y+A+
Sbjct: 82 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAI 118
>gb|AAG26165.1| photosystem II D2 protein [Cabomba caroliniana]
gi|27435882|gb|AAO13267.1| photosystem II D2 protein
[Lilium superbum]
Length = 326
Score = 119 bits (298), Expect = 2e-26
Identities = 62/97 (63%), Positives = 66/97 (67%), Gaps = 12/97 (12%)
Frame = -2
Query: 275 WFTGTTFLTSWYTHR------------D*QVPTPTNSLTRSLLLLWGPEA*GDFTRCCQL 132
WFTGTTF+TSWYTH V TP NSL SLLLLWGPEA GDFTR CQL
Sbjct: 22 WFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQL 81
Query: 131 GGLWTFNPLHSAFGLICFT*CQFELVRAVQLRSYDAL 21
GGLWTF LH AFGLI F QFEL R+VQLR Y+A+
Sbjct: 82 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAI 118
>gb|AAG44374.1| photosystem II D2 protein [Amborella trichopoda]
gi|27435862|gb|AAO13254.1| photosystem II D2 protein
[Ascarina lucida] gi|27435865|gb|AAO13256.1| photosystem
II D2 protein [Austrobaileya scandens]
gi|27435868|gb|AAO13258.1| photosystem II D2 protein
[Chloranthus japonicus] gi|27435903|gb|AAO13280.1|
photosystem II D2 protein [Schisandra chinensis]
gi|27435911|gb|AAO13285.1| photosystem II D2 protein
[Spathiphyllum wallisii]
Length = 326
Score = 119 bits (298), Expect = 2e-26
Identities = 62/97 (63%), Positives = 66/97 (67%), Gaps = 12/97 (12%)
Frame = -2
Query: 275 WFTGTTFLTSWYTHR------------D*QVPTPTNSLTRSLLLLWGPEA*GDFTRCCQL 132
WFTGTTF+TSWYTH V TP NSL SLLLLWGPEA GDFTR CQL
Sbjct: 22 WFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQL 81
Query: 131 GGLWTFNPLHSAFGLICFT*CQFELVRAVQLRSYDAL 21
GGLWTF LH AFGLI F QFEL R+VQLR Y+A+
Sbjct: 82 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAI 118
>gb|AAF82675.1| photosystem II D2 protein [Nymphaea odorata]
gi|27435876|gb|AAO13263.1| photosystem II D2 protein
[Gunnera chilensis]
Length = 326
Score = 119 bits (298), Expect = 2e-26
Identities = 62/97 (63%), Positives = 66/97 (67%), Gaps = 12/97 (12%)
Frame = -2
Query: 275 WFTGTTFLTSWYTHR------------D*QVPTPTNSLTRSLLLLWGPEA*GDFTRCCQL 132
WFTGTTF+TSWYTH V TP NSL SLLLLWGPEA GDFTR CQL
Sbjct: 22 WFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQL 81
Query: 131 GGLWTFNPLHSAFGLICFT*CQFELVRAVQLRSYDAL 21
GGLWTF LH AFGLI F QFEL R+VQLR Y+A+
Sbjct: 82 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAI 118
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,735,601
Number of Sequences: 1393205
Number of extensions: 9248876
Number of successful extensions: 18639
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 18205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18566
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
GNf059b12 |
BP071737 |
1 |
386 |
| 2 |
GENf041f05 |
BP060106 |
9 |
163 |
| 3 |
MR072h06_f |
BP081572 |
9 |
316 |
| 4 |
MR020a11_f |
BP077489 |
24 |
488 |
|
Lotus japonicus
Kazusa DNA Research Institute