Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002159A_C01 KMC002159A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200364.1| putative protein; protein id: At5g55530.1 [Arab... 94 1e-18
gb|AAO42307.1| unknown protein [Arabidopsis thaliana] 92 3e-18
pir||B96542 unknown protein [imported] - Arabidopsis thaliana gi... 89 3e-17
gb|AAM65452.1| unknown [Arabidopsis thaliana] 89 3e-17
ref|NP_564576.1| Expressed protein; protein id: At1g50570.1, sup... 89 3e-17
>ref|NP_200364.1| putative protein; protein id: At5g55530.1 [Arabidopsis thaliana]
gi|9758185|dbj|BAB08570.1|
gene_id:MTE17.25~pir||T07080~similar to unknown protein
[Arabidopsis thaliana]
Length = 439
Score = 93.6 bits (231), Expect = 1e-18
Identities = 50/66 (75%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Frame = -3
Query: 485 MVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSEQQKLQASKSSN-SRVFY 309
+VQQDIVDMYMKSMQQFT+SLAKMKLP+D +S PT S NSSS+ QKL KS+N SRVFY
Sbjct: 375 VVQQDIVDMYMKSMQQFTDSLAKMKLPLDIDS-PTKSENSSSDSQKLPTPKSNNGSRVFY 433
Query: 308 GSRAFF 291
GSR FF
Sbjct: 434 GSRPFF 439
>gb|AAO42307.1| unknown protein [Arabidopsis thaliana]
Length = 405
Score = 92.0 bits (227), Expect = 3e-18
Identities = 49/66 (74%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Frame = -3
Query: 485 MVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSEQQKLQASKSSN-SRVFY 309
+VQQDI DMYMKSMQQFT+SLAKMKLP+D +S PT S NSSS+ QKL KS+N SRVFY
Sbjct: 341 VVQQDIADMYMKSMQQFTDSLAKMKLPLDIDS-PTKSENSSSDSQKLPTPKSNNGSRVFY 399
Query: 308 GSRAFF 291
GSR FF
Sbjct: 400 GSRPFF 405
>pir||B96542 unknown protein [imported] - Arabidopsis thaliana
gi|12322326|gb|AAG51182.1|AC079279_3 unknown protein
[Arabidopsis thaliana]
Length = 675
Score = 88.6 bits (218), Expect = 3e-17
Identities = 48/65 (73%), Positives = 54/65 (82%)
Frame = -3
Query: 485 MVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSEQQKLQASKSSNSRVFYG 306
+VQQDIVDMY KS+QQFTESLAKMKLP+D +S PT S NSSS Q Q KS++SRVFYG
Sbjct: 615 VVQQDIVDMYTKSLQQFTESLAKMKLPLDIDS-PTQSENSSSSQ---QTPKSASSRVFYG 670
Query: 305 SRAFF 291
SRAFF
Sbjct: 671 SRAFF 675
>gb|AAM65452.1| unknown [Arabidopsis thaliana]
Length = 388
Score = 88.6 bits (218), Expect = 3e-17
Identities = 48/65 (73%), Positives = 54/65 (82%)
Frame = -3
Query: 485 MVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSEQQKLQASKSSNSRVFYG 306
+VQQDIVDMY KS+QQFTESLAKMKLP+D +S PT S NSSS Q Q KS++SRVFYG
Sbjct: 328 VVQQDIVDMYTKSLQQFTESLAKMKLPLDIDS-PTQSENSSSSQ---QTPKSASSRVFYG 383
Query: 305 SRAFF 291
SRAFF
Sbjct: 384 SRAFF 388
>ref|NP_564576.1| Expressed protein; protein id: At1g50570.1, supported by cDNA:
39481. [Arabidopsis thaliana]
gi|9454555|gb|AAF87878.1|AC012561_11 Unknown protein
[Arabidopsis thaliana]
Length = 388
Score = 88.6 bits (218), Expect = 3e-17
Identities = 48/65 (73%), Positives = 54/65 (82%)
Frame = -3
Query: 485 MVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSEQQKLQASKSSNSRVFYG 306
+VQQDIVDMY KS+QQFTESLAKMKLP+D +S PT S NSSS Q Q KS++SRVFYG
Sbjct: 328 VVQQDIVDMYTKSLQQFTESLAKMKLPLDIDS-PTQSENSSSSQ---QTPKSASSRVFYG 383
Query: 305 SRAFF 291
SRAFF
Sbjct: 384 SRAFF 388
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,185,574
Number of Sequences: 1393205
Number of extensions: 6777259
Number of successful extensions: 14383
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14362
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
