Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002158A_C01 KMC002158A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52452 ATP-dependent Clp proteinase (EC 3.4.21.-) catalytic... 172 2e-42
emb|CAA04393.1| ClpP [Arabidopsis thaliana] 172 2e-42
ref|NP_568644.1| ATP-dependent Clp protease proteolytic subunit ... 172 2e-42
dbj|BAB09167.1| ATP-dependent Clp protease-like protein [Arabido... 172 2e-42
gb|AAM65254.1| ATP-dependent Clp protease proteolytic subunit (C... 170 1e-41
>pir||T52452 ATP-dependent Clp proteinase (EC 3.4.21.-) catalytic chain P4
[imported] - Arabidopsis thaliana (fragment)
gi|5360593|dbj|BAA82068.1| nClpP4 [Arabidopsis thaliana]
Length = 299
Score = 172 bits (437), Expect = 2e-42
Identities = 85/100 (85%), Positives = 92/100 (92%)
Frame = -2
Query: 622 GASGQAIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIID 443
GASGQAIDVEIQAKEVMHNKNNVT II+G T R+FEQV KDIDRDRYMSPIEAVEYG+ID
Sbjct: 195 GASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLID 254
Query: 442 GVIDKESIIPLEPVPERVRSTLNYEEISKDPRKFLTPEIP 323
GVID +SIIPLEPVP+RV+ +NYEEISKDP KFLTPEIP
Sbjct: 255 GVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIP 294
>emb|CAA04393.1| ClpP [Arabidopsis thaliana]
Length = 228
Score = 172 bits (437), Expect = 2e-42
Identities = 85/100 (85%), Positives = 92/100 (92%)
Frame = -2
Query: 622 GASGQAIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIID 443
GASGQAIDVEIQAKEVMHNKNNVT II+G T R+FEQV KDIDRDRYMSPIEAVEYG+ID
Sbjct: 124 GASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLID 183
Query: 442 GVIDKESIIPLEPVPERVRSTLNYEEISKDPRKFLTPEIP 323
GVID +SIIPLEPVP+RV+ +NYEEISKDP KFLTPEIP
Sbjct: 184 GVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIP 223
>ref|NP_568644.1| ATP-dependent Clp protease proteolytic subunit (ClpP4); protein id:
At5g45390.1, supported by cDNA: 37901., supported by
cDNA: gi_14596088 [Arabidopsis thaliana]
gi|14596089|gb|AAK68772.1| ATP-dependent Clp
protease-like protein [Arabidopsis thaliana]
Length = 292
Score = 172 bits (437), Expect = 2e-42
Identities = 85/100 (85%), Positives = 92/100 (92%)
Frame = -2
Query: 622 GASGQAIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIID 443
GASGQAIDVEIQAKEVMHNKNNVT II+G T R+FEQV KDIDRDRYMSPIEAVEYG+ID
Sbjct: 188 GASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLID 247
Query: 442 GVIDKESIIPLEPVPERVRSTLNYEEISKDPRKFLTPEIP 323
GVID +SIIPLEPVP+RV+ +NYEEISKDP KFLTPEIP
Sbjct: 248 GVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIP 287
>dbj|BAB09167.1| ATP-dependent Clp protease-like protein [Arabidopsis thaliana]
Length = 301
Score = 172 bits (437), Expect = 2e-42
Identities = 85/100 (85%), Positives = 92/100 (92%)
Frame = -2
Query: 622 GASGQAIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIID 443
GASGQAIDVEIQAKEVMHNKNNVT II+G T R+FEQV KDIDRDRYMSPIEAVEYG+ID
Sbjct: 197 GASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLID 256
Query: 442 GVIDKESIIPLEPVPERVRSTLNYEEISKDPRKFLTPEIP 323
GVID +SIIPLEPVP+RV+ +NYEEISKDP KFLTPEIP
Sbjct: 257 GVIDGDSIIPLEPVPDRVKPRVNYEEISKDPMKFLTPEIP 296
>gb|AAM65254.1| ATP-dependent Clp protease proteolytic subunit (ClpP4) [Arabidopsis
thaliana]
Length = 292
Score = 170 bits (431), Expect = 1e-41
Identities = 84/100 (84%), Positives = 91/100 (91%)
Frame = -2
Query: 622 GASGQAIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGIID 443
GASGQ IDVEIQAKEVMHNKNNVT II+G T R+FEQV KDIDRDRYMSPIEAVEYG+ID
Sbjct: 188 GASGQVIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLID 247
Query: 442 GVIDKESIIPLEPVPERVRSTLNYEEISKDPRKFLTPEIP 323
GVID +SIIPLEPVP+RV+ +NYEEISKDP KFLTPEIP
Sbjct: 248 GVIDGDSIIPLEPVPDRVKPRVNYEEISKDPIKFLTPEIP 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,136,935
Number of Sequences: 1393205
Number of extensions: 10664601
Number of successful extensions: 30650
Number of sequences better than 10.0: 272
Number of HSP's better than 10.0 without gapping: 29804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30645
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
