Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002154A_C02 KMC002154A_c02
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL68924.1| replicase [African oil palm ringspot virus] 32 6.2
ref|XP_066685.2| similar to hypothetical protein FLJ20707 [Homo ... 32 6.2
dbj|BAB71482.1| unnamed protein product [Homo sapiens] 32 6.2
ref|NP_254119.1| probable acetyltransferase [Pseudomonas aerugin... 32 8.1
>gb|AAL68924.1| replicase [African oil palm ringspot virus]
Length = 1128
Score = 32.0 bits (71), Expect = 6.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 322 DEPLHFFCKNFDIFFNTVQRSLACDRDPLLFLSI 423
DE + FFC F N + CD+DPL+F S+
Sbjct: 800 DESIAFFCDTF----NVQTTAFVCDKDPLVFTSV 829
>ref|XP_066685.2| similar to hypothetical protein FLJ20707 [Homo sapiens]
Length = 451
Score = 32.0 bits (71), Expect = 6.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 343 CKNFDIFFNTVQRSLACDRDPLLFLSISLLVL 438
CK+ D+F N + + + CD DP L ++ L+V+
Sbjct: 105 CKDSDLFINVIIKQMICDTDPELGGAVHLMVV 136
>dbj|BAB71482.1| unnamed protein product [Homo sapiens]
Length = 452
Score = 32.0 bits (71), Expect = 6.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 343 CKNFDIFFNTVQRSLACDRDPLLFLSISLLVL 438
CK+ D+F N + + + CD DP L ++ L+V+
Sbjct: 105 CKDSDLFINVIIKQMICDTDPELGGAVHLMVV 136
>ref|NP_254119.1| probable acetyltransferase [Pseudomonas aeruginosa PA01]
gi|11350866|pir||C82966 probable acetyltransferase
PA5432 [imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9951761|gb|AAG08817.1|AE004956_1 probable
acetyltransferase [Pseudomonas aeruginosa PAO1]
Length = 149
Score = 31.6 bits (70), Expect = 8.1
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -2
Query: 259 DECLNI*AVMWLDEPENDFKTMVFHDKCWK--DLKYLKLIFGLE*LLD---GRR*ITHCY 95
DE +N A+ WLDE ++H CW D YL+ +F E L GRR I H Y
Sbjct: 49 DEPMNA-ALAWLDERAVGLVHWIYHRSCWTVGDYCYLQDLFVAEGLRGEGIGRRLIEHVY 107
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,268,694
Number of Sequences: 1393205
Number of extensions: 9959411
Number of successful extensions: 38083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38063
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
