Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002152A_C01 KMC002152A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563745.1| expressed protein; protein id: At1g05620.1, sup... 110 1e-23
pir||C86190 hypothetical protein [imported] - Arabidopsis thalia... 110 1e-23
ref|NP_565843.1| expressed protein; protein id: At2g36310.1, sup... 55 4e-07
pir||B84779 hypothetical protein At2g36310 [imported] - Arabidop... 43 0.002
ref|NP_421416.1| inosine-uridine preferring nucleoside hydrolase... 43 0.003
>ref|NP_563745.1| expressed protein; protein id: At1g05620.1, supported by cDNA:
39571. [Arabidopsis thaliana] gi|21593497|gb|AAM65464.1|
unknown [Arabidopsis thaliana]
gi|25083300|gb|AAN72060.1| expressed protein
[Arabidopsis thaliana]
Length = 322
Score = 110 bits (275), Expect = 1e-23
Identities = 56/72 (77%), Positives = 61/72 (83%)
Frame = -1
Query: 548 VLAAVDPSLFTYIEGVVRVQTSGITRGLTILDNKQKRFGEITEWSNKPTVKVAVTVDAPR 369
+LAA PSLFTY EGV RVQTSGITRGLT+L N KRF E EWS+KPTVKVAVTVDAP
Sbjct: 251 ILAAFLPSLFTYTEGVARVQTSGITRGLTLLYNNLKRFEEANEWSDKPTVKVAVTVDAPA 310
Query: 368 VVKLVMDRLMDS 333
VVKL+MDRLM+S
Sbjct: 311 VVKLIMDRLMES 322
>pir||C86190 hypothetical protein [imported] - Arabidopsis thaliana
gi|4836912|gb|AAD30614.1|AC007153_6 Hypothetical protein
[Arabidopsis thaliana]
Length = 358
Score = 110 bits (275), Expect = 1e-23
Identities = 56/72 (77%), Positives = 61/72 (83%)
Frame = -1
Query: 548 VLAAVDPSLFTYIEGVVRVQTSGITRGLTILDNKQKRFGEITEWSNKPTVKVAVTVDAPR 369
+LAA PSLFTY EGV RVQTSGITRGLT+L N KRF E EWS+KPTVKVAVTVDAP
Sbjct: 287 ILAAFLPSLFTYTEGVARVQTSGITRGLTLLYNNLKRFEEANEWSDKPTVKVAVTVDAPA 346
Query: 368 VVKLVMDRLMDS 333
VVKL+MDRLM+S
Sbjct: 347 VVKLIMDRLMES 358
>ref|NP_565843.1| expressed protein; protein id: At2g36310.1, supported by cDNA:
2576., supported by cDNA: gi_15809829, supported by
cDNA: gi_17978870 [Arabidopsis thaliana]
gi|15809830|gb|AAL06843.1| At2g36310/F2H17.8
[Arabidopsis thaliana] gi|17978871|gb|AAL47407.1|
At2g36310/F2H17.8 [Arabidopsis thaliana]
gi|20197937|gb|AAD21435.2| expressed protein
[Arabidopsis thaliana] gi|21554564|gb|AAM63615.1|
unknown [Arabidopsis thaliana]
Length = 336
Score = 55.5 bits (132), Expect = 4e-07
Identities = 30/69 (43%), Positives = 40/69 (57%)
Frame = -1
Query: 545 LAAVDPSLFTYIEGVVRVQTSGITRGLTILDNKQKRFGEITEWSNKPTVKVAVTVDAPRV 366
+A V P LFTY +GVVRV+T GI G T++D KR+ W + VA TVD V
Sbjct: 266 VAVVRPDLFTYKKGVVRVETQGICVGHTLMDQGLKRWNGSNPWVGYSPISVAWTVDVEGV 325
Query: 365 VKLVMDRLM 339
++ V +LM
Sbjct: 326 LEYVKAKLM 334
>pir||B84779 hypothetical protein At2g36310 [imported] - Arabidopsis thaliana
Length = 305
Score = 43.1 bits (100), Expect = 0.002
Identities = 21/37 (56%), Positives = 26/37 (69%)
Frame = -1
Query: 545 LAAVDPSLFTYIEGVVRVQTSGITRGLTILDNKQKRF 435
+A V P LFTY +GVVRV+T GI G T++D KRF
Sbjct: 258 VAVVRPDLFTYKKGVVRVETQGICVGHTLMDQGLKRF 294
>ref|NP_421416.1| inosine-uridine preferring nucleoside hydrolase [Caulobacter
crescentus CB15] gi|25321060|pir||D87573 inosine-uridine
preferring nucleoside hydrolase [imported] - Caulobacter
crescentus gi|13424190|gb|AAK24584.1| inosine-uridine
preferring nucleoside hydrolase [Caulobacter crescentus
CB15]
Length = 323
Score = 42.7 bits (99), Expect = 0.003
Identities = 25/64 (39%), Positives = 33/64 (51%)
Frame = -1
Query: 548 VLAAVDPSLFTYIEGVVRVQTSGITRGLTILDNKQKRFGEITEWSNKPTVKVAVTVDAPR 369
V +DPSLFT G VRV T GI G T + + FG + W ++P V VD R
Sbjct: 251 VAYVIDPSLFTVRRGSVRVVTEGIALGQTCQKAEGELFGP-SAWDDQPIQAATVAVDGAR 309
Query: 368 VVKL 357
++ L
Sbjct: 310 LLTL 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,786,055
Number of Sequences: 1393205
Number of extensions: 8560211
Number of successful extensions: 22487
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22473
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
