Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002151A_C01 KMC002151A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 53 1e-10
gb|EAA06919.1| agCP7445 [Anopheles gambiae str. PEST] 53 4e-10
gb|EAA13548.1| agCP7725 [Anopheles gambiae str. PEST] 53 4e-10
gb|EAA13323.1| agCP2844 [Anopheles gambiae str. PEST] 53 4e-10
gb|EAA14450.1| agCP8775 [Anopheles gambiae str. PEST] 53 4e-10
>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Contains: Protease ; Reverse transcriptase ;
Endonuclease] gi|100342|pir||S04273 retrovirus-related
reverse transcriptase homolog - common tobacco
retrotransposon copia-like gi|20045|emb|CAA32025.1| ORF
[Nicotiana tabacum]
Length = 1328
Score = 52.8 bits (125), Expect(2) = 1e-10
Identities = 33/83 (39%), Positives = 43/83 (51%)
Frame = -3
Query: 494 KRLYTLRMSESTSMSDHIHHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIK 315
K+LY L MSE T+ H++ N L QL+ I E ++A LLL SLP SYD L I
Sbjct: 105 KQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTIL 164
Query: 314 NNNIVNHLPLMMLSEVLLEEDSR 246
+ L + S +LL E R
Sbjct: 165 HGKTTIELK-DVTSALLLNEKMR 186
Score = 34.3 bits (77), Expect(2) = 1e-10
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 183 RGRSKSRKKINLK-CYHCGQR*HLKKDC 103
RG+SK+R K ++ CY+C Q H K+DC
Sbjct: 218 RGKSKNRSKSRVRNCYNCNQPGHFKRDC 245
>gb|EAA06919.1| agCP7445 [Anopheles gambiae str. PEST]
Length = 530
Score = 52.8 bits (125), Expect(2) = 4e-10
Identities = 32/87 (36%), Positives = 44/87 (49%)
Frame = -3
Query: 494 KRLYTLRMSESTSMSDHIHHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIK 315
KRL TLRM E SM H + L QL + + EN+ L +LPDSYD LV ++
Sbjct: 97 KRLATLRMKEGCSMRSHFAEFDELVRQLKNAGAKMEENDLVSQLFLTLPDSYDPLVTALE 156
Query: 314 NNNIVNHLPLMMLSEVLLEEDSRADKI 234
N + M+ +L EE R D++
Sbjct: 157 NIQDKDLSLEMVKHRLLGEESKRVDRV 183
Score = 32.3 bits (72), Expect(2) = 4e-10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 180 GRSKSRKKINLKCYHCGQR*HLKKDC 103
G S KK +CY CG+ H++KDC
Sbjct: 196 GGSNQMKKFKGRCYRCGKLGHMQKDC 221
>gb|EAA13548.1| agCP7725 [Anopheles gambiae str. PEST]
Length = 385
Score = 52.8 bits (125), Expect(2) = 4e-10
Identities = 32/87 (36%), Positives = 44/87 (49%)
Frame = -3
Query: 494 KRLYTLRMSESTSMSDHIHHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIK 315
KRL TLRM E SM H + L QL + + EN+ L +LPDSYD LV ++
Sbjct: 107 KRLATLRMKEGCSMRSHFAEFDELVRQLKNAGAKMEENDLVSQLFLTLPDSYDPLVTALE 166
Query: 314 NNNIVNHLPLMMLSEVLLEEDSRADKI 234
N + M+ +L EE R D++
Sbjct: 167 NIQDKDLSLEMVKHRLLGEESKRVDRV 193
Score = 32.3 bits (72), Expect(2) = 4e-10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 180 GRSKSRKKINLKCYHCGQR*HLKKDC 103
G S KK +CY CG+ H++KDC
Sbjct: 206 GGSNQMKKFKGRCYRCGKLGHMQKDC 231
>gb|EAA13323.1| agCP2844 [Anopheles gambiae str. PEST]
Length = 385
Score = 52.8 bits (125), Expect(2) = 4e-10
Identities = 32/87 (36%), Positives = 44/87 (49%)
Frame = -3
Query: 494 KRLYTLRMSESTSMSDHIHHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIK 315
KRL TLRM E SM H + L QL + + EN+ L +LPDSYD LV ++
Sbjct: 107 KRLATLRMKEGCSMRSHFAEFDELVRQLKNAGAKMEENDLVSQLFLTLPDSYDPLVTALE 166
Query: 314 NNNIVNHLPLMMLSEVLLEEDSRADKI 234
N + M+ +L EE R D++
Sbjct: 167 NIQDKDLSLEMVKHRLLGEESKRVDRV 193
Score = 32.3 bits (72), Expect(2) = 4e-10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 180 GRSKSRKKINLKCYHCGQR*HLKKDC 103
G S KK +CY CG+ H++KDC
Sbjct: 206 GGSNQMKKFKGRCYRCGKLGHMQKDC 231
>gb|EAA14450.1| agCP8775 [Anopheles gambiae str. PEST]
Length = 385
Score = 52.8 bits (125), Expect(2) = 4e-10
Identities = 32/87 (36%), Positives = 44/87 (49%)
Frame = -3
Query: 494 KRLYTLRMSESTSMSDHIHHMNTLFAQLSASNFTIGENERAELLLESLPDSYDQLVINIK 315
KRL TLRM E SM H + L QL + + EN+ L +LPDSYD LV ++
Sbjct: 107 KRLATLRMKEGCSMRSHFAEFDELVRQLKNAGAKMQENDLVSQLFLTLPDSYDPLVTALE 166
Query: 314 NNNIVNHLPLMMLSEVLLEEDSRADKI 234
N + M+ +L EE R D++
Sbjct: 167 NIQDKDLSLEMVKHRLLGEESKRVDRV 193
Score = 32.3 bits (72), Expect(2) = 4e-10
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 180 GRSKSRKKINLKCYHCGQR*HLKKDC 103
G S KK +CY CG+ H++KDC
Sbjct: 206 GGSNQMKKFKGRCYRCGKLGHMQKDC 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,854,215
Number of Sequences: 1393205
Number of extensions: 7575770
Number of successful extensions: 25133
Number of sequences better than 10.0: 760
Number of HSP's better than 10.0 without gapping: 23028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25120
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
