Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002148A_C01 KMC002148A_c01
(663 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG ... 238 7e-62
emb|CAA06853.1| 26S protease regulatory subunit 6 [Cicer arietinum] 236 3e-61
ref|NP_200637.1| 26S proteasome AAA-ATPase subunit RPT3; protein... 232 3e-60
dbj|BAB78494.1| 26S proteasome regulatory particle triple-A ATPa... 231 5e-60
sp|P34123|PRS6_DICDI 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG ... 203 1e-51
>sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG gi|7435738|pir||T07110
vacuolar proton-ATPase chain E - potato
gi|1155334|gb|AAB67835.1| POTATP1
Length = 413
Score = 238 bits (606), Expect = 7e-62
Identities = 117/118 (99%), Positives = 117/118 (99%)
Frame = -2
Query: 662 QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDL 483
QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDL
Sbjct: 296 QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDL 355
Query: 482 EDYVSRPDKISAAEIQAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 309
EDYVSRPDKISAAEI AICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK
Sbjct: 356 EDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 413
>emb|CAA06853.1| 26S protease regulatory subunit 6 [Cicer arietinum]
Length = 177
Score = 236 bits (601), Expect = 3e-61
Identities = 116/118 (98%), Positives = 116/118 (98%)
Frame = -2
Query: 662 QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDL 483
QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNL DEVDL
Sbjct: 60 QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDL 119
Query: 482 EDYVSRPDKISAAEIQAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 309
EDYVSRPDKISAAEI AICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK
Sbjct: 120 EDYVSRPDKISAAEISAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 177
>ref|NP_200637.1| 26S proteasome AAA-ATPase subunit RPT3; protein id: At5g58290.1,
supported by cDNA: gi_17979230, supported by cDNA:
gi_6652881 [Arabidopsis thaliana]
gi|28558168|sp|Q9SEI4|PRS6_ARATH 26S protease regulatory
subunit 6B homolog (26S proteasome AAA-ATPase subunit
RPT3) (Regulatory particle triple-A ATPase subunit 3)
gi|6652882|gb|AAF22523.1|AF123392_1 26S proteasome
AAA-ATPase subunit RPT3 [Arabidopsis thaliana]
gi|8777330|dbj|BAA96920.1| 26S proteasome AAA-ATPase
subunit RPT3 [Arabidopsis thaliana]
gi|17979231|gb|AAL49932.1| AT4g10340/F24G24_140
[Arabidopsis thaliana]
Length = 408
Score = 232 bits (592), Expect = 3e-60
Identities = 114/118 (96%), Positives = 115/118 (96%)
Frame = -2
Query: 662 QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDL 483
QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCT+KMNL DEVDL
Sbjct: 291 QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDL 350
Query: 482 EDYVSRPDKISAAEIQAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 309
EDYVSRPDKISAAEI AICQEAGMHAVRKNRYVILPKDFEKGYR NVKKPDTDFEFYK
Sbjct: 351 EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFEFYK 408
>dbj|BAB78494.1| 26S proteasome regulatory particle triple-A ATPase subunit3 [Oryza
sativa (japonica cultivar-group)]
Length = 368
Score = 231 bits (590), Expect = 5e-60
Identities = 113/118 (95%), Positives = 116/118 (97%)
Frame = -2
Query: 662 QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDL 483
QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNL DEVDL
Sbjct: 251 QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDL 310
Query: 482 EDYVSRPDKISAAEIQAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 309
EDYVSRPDKISAA+I AICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKP+TDF+FYK
Sbjct: 311 EDYVSRPDKISAADIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPETDFDFYK 368
>sp|P34123|PRS6_DICDI 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) gi|422298|pir||JN0611 probable transcription
factor DdTBP2 - slime mold (Dictyostelium discoideum)
gi|290055|gb|AAA33253.1| HIV1 TAT-binding protein
Length = 403
Score = 203 bits (517), Expect = 1e-51
Identities = 97/116 (83%), Positives = 107/116 (91%)
Frame = -2
Query: 659 TVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLE 480
+VNVKVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRL+FQV T+KMNL DEVDLE
Sbjct: 287 SVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLE 346
Query: 479 DYVSRPDKISAAEIQAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 312
DYVSRPDK+S AEIQ+ICQEAGMHA+RKNRYVILPKDFEKGY+ ++KK +F FY
Sbjct: 347 DYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHEFNFY 402
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,203,403
Number of Sequences: 1393205
Number of extensions: 11381606
Number of successful extensions: 29343
Number of sequences better than 10.0: 1003
Number of HSP's better than 10.0 without gapping: 28543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29252
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
