Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002147A_C01 KMC002147A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564040.1| GDP-L-fucose synthetase, putative; protein id: ... 251 7e-66
ref|NP_177468.1| GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-re... 250 9e-66
gb|ZP_00077142.1| hypothetical protein [Methanosarcina barkeri] 198 4e-50
ref|ZP_00118361.1| hypothetical protein [Cytophaga hutchinsonii] 190 1e-47
ref|NP_668408.1| putative nucleotide di-P-sugar epimerase or deh... 189 3e-47
>ref|NP_564040.1| GDP-L-fucose synthetase, putative; protein id: At1g17890.1,
supported by cDNA: 19576., supported by cDNA:
gi_17380847, supported by cDNA: gi_20465282 [Arabidopsis
thaliana] gi|25305661|pir||B86314 F2H15.12 protein -
Arabidopsis thaliana
gi|9665067|gb|AAF97269.1|AC034106_12 Strong similarity
to GER1 from Arabidopsis thaliana gb|AF045286. ESTs
gb|AI996642, gb|AV533951 come from this gene
gi|17380848|gb|AAL36236.1| putative GDP-L-fucose
synthetase [Arabidopsis thaliana]
gi|20465283|gb|AAM20005.1| putative GDP-L-fucose
synthetase [Arabidopsis thaliana]
Length = 328
Score = 251 bits (640), Expect = 7e-66
Identities = 119/142 (83%), Positives = 128/142 (89%)
Frame = -3
Query: 600 YGWNDNFHPENSHVLPALMRRFHEAKVKGAKEVVVWGTGSPLREFLHVDDLADAVVFMME 421
YG NDNFHPENSHVLPALMRRFHEAK A EVVVWG+GSPLREFLHVDDLADA VF+M+
Sbjct: 183 YGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLADACVFLMD 242
Query: 420 KYSGLEHLNVGSGKEVTIKELAELMKEVVGFEGDLVWDTTKPDGTPRKLMDSSKLAGLGW 241
+YSG EH+NVGSG EVTIKELAEL+KEVVGF+G LVWDTTKPDGTPRKLMDSSKLA LGW
Sbjct: 243 QYSGFEHVNVGSGVEVTIKELAELVKEVVGFKGKLVWDTTKPDGTPRKLMDSSKLASLGW 302
Query: 240 TAKVSLKDGLVDTYKWYEENVV 175
T K+SLKDGL TY+WY ENVV
Sbjct: 303 TPKISLKDGLSQTYEWYLENVV 324
>ref|NP_177468.1| GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase (GER1);
protein id: At1g73250.1, supported by cDNA: gi_7804473
[Arabidopsis thaliana] gi|25305665|pir||F96758
hypothetical protein T18K17.8 [imported] - Arabidopsis
thaliana gi|6016479|gb|AAC02703.2|
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
[Arabidopsis thaliana] gi|7804474|dbj|BAA95670.1|
GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
[Arabidopsis thaliana]
gi|12324315|gb|AAG52124.1|AC010556_6
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1); 21556-22494 [Arabidopsis thaliana]
Length = 312
Score = 250 bits (639), Expect = 9e-66
Identities = 118/143 (82%), Positives = 130/143 (90%)
Frame = -3
Query: 600 YGWNDNFHPENSHVLPALMRRFHEAKVKGAKEVVVWGTGSPLREFLHVDDLADAVVFMME 421
YG NDNFHPENSHVLPALMRRFHEAKV GA+EVVVWGTGSPLREFLHVDDLADA VF+++
Sbjct: 169 YGPNDNFHPENSHVLPALMRRFHEAKVNGAEEVVVWGTGSPLREFLHVDDLADACVFLLD 228
Query: 420 KYSGLEHLNVGSGKEVTIKELAELMKEVVGFEGDLVWDTTKPDGTPRKLMDSSKLAGLGW 241
+YSGLEH+N+GSG+EVTI+ELAEL+KEVVGFEG L WD TKPDGTPRKLMDSSKLA LGW
Sbjct: 229 RYSGLEHVNIGSGQEVTIRELAELVKEVVGFEGKLGWDCTKPDGTPRKLMDSSKLASLGW 288
Query: 240 TAKVSLKDGLVDTYKWYEENVVN 172
T KVSL+DGL TY WY +NV N
Sbjct: 289 TPKVSLRDGLSQTYDWYLKNVCN 311
>gb|ZP_00077142.1| hypothetical protein [Methanosarcina barkeri]
Length = 312
Score = 198 bits (504), Expect = 4e-50
Identities = 93/144 (64%), Positives = 115/144 (79%), Gaps = 3/144 (2%)
Frame = -3
Query: 600 YGWNDNFHPENSHVLPALMRRFHEAKVKGAKEVVVWGTGSPLREFLHVDDLADAVVFMME 421
YG NDNF E SHV+PAL+R+FHEAKV EVVVWGTG PLREF+HVDD+ADA VF+ME
Sbjct: 168 YGPNDNFDLETSHVMPALIRKFHEAKVNNKPEVVVWGTGKPLREFMHVDDMADACVFLME 227
Query: 420 KYSGLE---HLNVGSGKEVTIKELAELMKEVVGFEGDLVWDTTKPDGTPRKLMDSSKLAG 250
Y E +N+G G++VTI EL EL+KE+VGFEG + +DT+KPDGTPRKLMD SKL G
Sbjct: 228 NYDFSEVGEFVNIGVGEDVTISELVELIKEIVGFEGKINYDTSKPDGTPRKLMDVSKLNG 287
Query: 249 LGWTAKVSLKDGLVDTYKWYEENV 178
LGW A++SLKDG+ +TY WY++ +
Sbjct: 288 LGWKARMSLKDGIKETYGWYQDQI 311
>ref|ZP_00118361.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 308
Score = 190 bits (482), Expect = 1e-47
Identities = 89/135 (65%), Positives = 109/135 (79%)
Frame = -3
Query: 600 YGWNDNFHPENSHVLPALMRRFHEAKVKGAKEVVVWGTGSPLREFLHVDDLADAVVFMME 421
YG NDN+ NSHVLPAL+R+FHEAKV G K V VWG+GSPLREFLHVDDLA+A +F+ME
Sbjct: 168 YGPNDNYDLNNSHVLPALLRKFHEAKVNGTKTVEVWGSGSPLREFLHVDDLAEACLFLME 227
Query: 420 KYSGLEHLNVGSGKEVTIKELAELMKEVVGFEGDLVWDTTKPDGTPRKLMDSSKLAGLGW 241
Y+ +N+GSG +++IKELA L+KEVVGFEG+LV+D TKPDGTPRKLMD SK+ LGW
Sbjct: 228 SYNDKGFVNIGSGVDLSIKELATLVKEVVGFEGELVFDATKPDGTPRKLMDVSKIEKLGW 287
Query: 240 TAKVSLKDGLVDTYK 196
K+ LK+G+ YK
Sbjct: 288 KYKIGLKEGITSVYK 302
>ref|NP_668408.1| putative nucleotide di-P-sugar epimerase or dehydratase [Yersinia
pestis KIM] gi|6580725|emb|CAB63301.1| GDP-L-fucose
synthetase [Yersinia pseudotuberculosis (type O:1b)]
gi|21957829|gb|AAM84659.1|AE013711_3 putative nucleotide
di-P-sugar epimerase or dehydratase [Yersinia pestis
KIM]
Length = 321
Score = 189 bits (479), Expect = 3e-47
Identities = 91/146 (62%), Positives = 113/146 (77%), Gaps = 9/146 (6%)
Frame = -3
Query: 600 YGWNDNFHPENSHVLPALMRRFHEAKVKGAKEVVVWGTGSPLREFLHVDDLADAVVFMME 421
YG NDNFHPENSHV+PAL+RRFHEAK++ KE+VVWGTG P+REFLHVDD+A A V +ME
Sbjct: 167 YGENDNFHPENSHVIPALLRRFHEAKIRNDKEMVVWGTGKPMREFLHVDDMAAASVHVME 226
Query: 420 ---------KYSGLEHLNVGSGKEVTIKELAELMKEVVGFEGDLVWDTTKPDGTPRKLMD 268
L H+NVG+G + TI+ELAE M +VVGF G+LV+D+TKPDGTPRKLMD
Sbjct: 227 LSDQIYQTNTQPMLSHINVGTGVDCTIRELAETMAKVVGFTGNLVFDSTKPDGTPRKLMD 286
Query: 267 SSKLAGLGWTAKVSLKDGLVDTYKWY 190
S+LA LGW ++SL+ GL TY+W+
Sbjct: 287 VSRLAKLGWCYQISLEVGLTMTYQWF 312
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,955,635
Number of Sequences: 1393205
Number of extensions: 13350043
Number of successful extensions: 49359
Number of sequences better than 10.0: 976
Number of HSP's better than 10.0 without gapping: 43796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48180
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
